Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01321 ATGGGTAGAAAGAAAAGAACTGAAGGACCTAGTGGGGGCGAAAGCTCTGAGGCTCAACGCCCTGCTGAAAGAAGTGCACCGCCCCAACAACAGGCTGCTGCCCCTGTTGGGACTGGACCCCAAGGAGGTAGAACCTGGGGTCCCCAAGGAGGGCGAGGAGGTTATGGTGGAGGCCGTGGCCGTGGGATGCCTCAGCAACAATATGGCATCCCCCAACAGCAATATGGCGCTCCAGCTGATTATCAAGGTAGGGGAAGAGGAGGGTCTTCTCAGCAAGGAGGCCGTGGGGGATATGGTGGTGGCCGCAGTGGTGGTGTCGGCGGTGGTGGCCGAGGAATAGGTCCTTCATATGGTGGCTCTTCTAGGCCACCAGTACCCGAGCTGCACCAAGCAACCTCAGTTCAATCATATCAAACTGGGGTGAGTCCTCAGCCTACATCATCTGAGGCGAGTTCTTCCCTGCCGCCTGAACCGGTGGATTTGGAGCCATCGGTGGGGCAGATGGTGATTTCTGAAGCTACTCCTACCCCTCCTCCTCAAAGTAAATCATCCATGAGGTTTCCCCTTCGACCTGGGAAGGGTAGCTATGGCATAAAATGCATTGTTAAGGCTAATCATTTCTTTGCGGAGTTACCTAACAAAGATCTTCATCAATATGACGTAACCATTACTCCAGAAGTGACGTCTAGAGGTGTGAACCGTGCTGTTATGGAGCAATTGGTCAGGCTTTATCGGGAATCTCACTTGGGCAAGAGGCTTCCTGCCTATGATGGACGCAAAAGCCTCTATACTGCTGGGCCCTTGCCATTTATTTCAAAGGAGTTTAGAATTACTCTTATTGATGATGATGAAGGAGCAGCAGGAGGACAGAGGAGGGACCGAGAGTTCAAGGTGGTGATTAAGTTGGCTGCACGGGCAGACCTTCACCATTTAGGGCTGTTTTTACAAGGAAGGCAGACTGATGCTCCACAAGAGGCTTTGCAGGTCCTTGACATTGTACTGCGTGAACTCCCTACTACAAGGTATTGTCCTGTAGGAAGATCATTTTATTCACCCGATCTGGGAAGAAGACAACCTTTAGGTGAGGGATTGGAGAGCTGGCGTGGTTTCTACCAGAGTATTCGTCCAACTCAGATGGGGTTGTCACTGAATATTGATATGTCCTCCACTGCTTTTATTGAGCCACTGCCAGTTATAGATTTTGTTACCCAATTGCTGAATAGAGATGTTTCTGCTCGACCTCTGTCTGATGCTGATCGAGTGAAGATAAAGAAAGCTCTCCGAGGGATCAAAGTTGAAGTGACACACAGAGGGAATATGAGAAGAAAATACCGAATTTCTGGCCTGACTTCTCAGGCAACAAGAGAGTTGACGTTCCCTGTAGATGAAAGAGGAACTATGAAATCTGTTGTGGAGTACTTCTATGAGACATATGGGTTTGTCATTCAGCATACTCAGTGGCCTTGTCTGCAAGTTGGGAATACACAAAGGCCAAACTATTTGCCAATGGAGGTATGCAAGATTGTGGAAGGGCAGAGATATTCTAAGAGGTTGAATGAGAGACAGATCACTGCTCTTCTGAAAGTTACATGCCAGCGTCCTGTTGAGAGGGAGCGTGATATCATGCAGACTGTATATCACAATGCATACCATGAAGATCCTTATGCCCAAGAGTTTGGAATCAAAATTAGTGAGAAGCTCGCTCAAGTTGAAGCACGCATCCTACCTGCACCCTGGCTCAAATATCATGATACAGGTAGAGAGAAGGATTGTCTTCCTCAAGTTGGGCAGTGGAATATGATGAATAAGAAAATGGTTAATGGGGGTACTGTTAACCATTGGTTCTGCATCAATTTTTCAAGGAGTGTTCAGGATAGCGTTGCCCGTGGCTTTTGCTATGAACTTGCTCAGATGTGCTATATATCTGGAATGGCATTTAATCCGGAGCCAGTTGTCCCACCAGTCAGCGCTCGCCCGGATCAGGTGGAGAAAGTTCTAAAAACCCGTTATCATGATGCAAAGAATAAGCTTCAGGGAAGGGAGCTTGATTTGCTCATTGTTATTTTACCTGACAATAATGGATCTCTTTATGGTGATCTCAAACGTATATGTGAGACAGATCTTGGACTAGTTTCACAATGTTGTTTGACTAAGCATGTCTTTAAAATGAGCAAGCAATACCTTGCAAATGTGGCATTGAAAATTAATGTCAAAGTGGGAGGGAGAAACACTGTACTTGTTGATGCACTTTCACGGCGCATCCCCTTGGTTGGAGACAGACCAACTATTATTTTTGGAGCTGATGTGACTCATCCACATCCTGGAGAGGATTCAAGCCCATCAATTGCAGCTGTTGTGGCTTCCCAAGATTATCCTGAAATTACAAAGTATGCTGGTTTAGTCTGCGCCCAAGCTCATAGACAGGAACTCATTCAGGACCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACAGTGACTGGTGGAATGATCAAAGAACTTCTTATATCTTTTAGGAGGGCTACGGGACAGAAGCCACAACGCATTATATTTTACAGGGATGGTGTCAGTGAAGGTCAATTTTACCAAGTTCTACTGTTTGAACTTGATGCTATTCGAAAGGCATGTGCATCCCTTGAACCCAACTATCAACCTCCTGTTACATTTGTTGTGGTTCAAAAGCGTCATCACACGAGGCTCTTTGCTAGCAACCATCATGACAAGAGTTCTGTTGACAGGAGTGGCAACATATTGCCTGGCACAGTTGTCGATTCCAAAATCTGTCATCCAACAGAATTTGACTTTTATCTTTGTAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCTCACTATCACGTGTTGTGGGATGAAAACAATTTTACTGCAGATGCTTTGCAAACTCTTACTAACAACCTTTGCTACACATATGCTAGATGCACACGATCTGTTTCAATTGTGCCTCCTGCATATTATGCCCACTTGGCTGCTTTCCGAGCAAGATTTTACATGGAACCAGAGACGTCCGATAGTGGGTCCATGACGAGTGGTGCAGTTGCTGGCCGTGGAATGGGTGGCGGTATTGGTCGAAGCACCCGAGCACCTGGAGCTAATGCTGCTGTGAGACCACTACCTGCTCTGAAGGAGAATGTGAAGAGGGTTATGTTTTATTGTTAA 3177 0.4655 MGRKKRTEGPSGGESSEAQRPAERSAPPQQQAAAPVGTGPQGGRTWGPQGGRGGYGGGRGRGMPQQQYGIPQQQYGAPADYQGRGRGGSSQQGGRGGYGGGRSGGVGGGGRGIGPSYGGSSRPPVPELHQATSVQSYQTGVSPQPTSSEASSSLPPEPVDLEPSVGQMVISEATPTPPPQSKSSMRFPLRPGKGSYGIKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLIDDDEGAAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVYHNAYHEDPYAQEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRSVQDSVARGFCYELAQMCYISGMAFNPEPVVPPVSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVGDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGGIGRSTRAPGANAAVRPLPALKENVKRVMFYC 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01321 1058 FunFam Argonaute 10 574 747 - -
Vian8g01321 1058 SMART DUF1785_2 343 395 IPR014811 -
Vian8g01321 1058 Gene3D - 753 1058 IPR036397 GO:0003676
Vian8g01321 1058 MobiDBLite consensus disorder prediction 1 162 - -
Vian8g01321 1058 CDD PAZ_argonaute_like 395 509 - -
Vian8g01321 1058 MobiDBLite consensus disorder prediction 22 36 - -
Vian8g01321 1058 Gene3D - 574 747 - -
Vian8g01321 1058 Pfam PAZ domain 400 525 IPR003100 GO:0005515
Vian8g01321 1058 Pfam Mid domain of argonaute 593 668 IPR032473 -
Vian8g01321 1058 MobiDBLite consensus disorder prediction 126 154 - -
Vian8g01321 1058 Pfam Argonaute linker 1 domain 344 394 IPR014811 -
Vian8g01321 1058 ProSiteProfiles Piwi domain profile. 684 1005 IPR003165 GO:0003676
Vian8g01321 1058 FunFam protein argonaute 10-like 753 1058 - -
Vian8g01321 1058 SMART Piwi_a_2 684 1005 IPR003165 GO:0003676
Vian8g01321 1058 Pfam Glycine-rich region of argonaut 76 168 IPR024357 -
Vian8g01321 1058 ProSiteProfiles PAZ domain profile. 396 510 IPR003100 GO:0005515
Vian8g01321 1058 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 179 1006 - -
Vian8g01321 1058 SUPERFAMILY Ribonuclease H-like 670 1005 IPR012337 -
Vian8g01321 1058 FunFam Protein argonaute-2 389 515 - -
Vian8g01321 1058 CDD Piwi_ago-like 554 1004 IPR045246 -
Vian8g01321 1058 Pfam N-terminal domain of argonaute 200 334 IPR032474 -
Vian8g01321 1058 SUPERFAMILY PAZ domain 201 550 IPR036085 GO:0005515
Vian8g01321 1058 Pfam Piwi domain 685 1004 IPR003165 GO:0003676
Vian8g01321 1058 SMART PAZ_2_a_3 400 532 IPR003100 GO:0005515
Vian8g01321 1058 Pfam Argonaute linker 2 domain 536 582 IPR032472 -
Vian8g01321 1058 Gene3D paz domain 389 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01321 Vian-Chr8 32207450 32212786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01321 80 1058 Eukaryotic Initiation Factors Gene Family AT1G48410 82.049 0.0 1627