Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01306 ATGGCTGTAACATCACCTTCCCAAGCATACAGCTACGATGTGTTTCTCAATTTCAGAGGCTCAGACACACGCCAAGGTTTTACTGGCTTTCTCTACAAAGCTCTACTTGACAGTGGAATCCACATTTTCATTGATGATGAGGGCATTCAGAGTGGAAAGATAATAACACCAGAACTCAAGGAGGCAATTGAAAAGTCCAGGATTGCCATCACTGTGCTCTCTACAAACTATGCTTCTTCTTCCTTCTGTTTAGATGAACTTGAAATAATTCTTGACTGCTTCAAAAGGACAAAACTCTTGGTGTTGCCTGTCTTTTACAAGGTGCCTCCTTCTCATGTCAGACACCAGCAAGGAAGTTATGGAGAAGCATTGGCCAGACTAGAGGAAGGGCTCCACCATAAAATGAAGAATTGGAAGAAGGCGCTGAAAAAAGTAGCTAACCATTCTGGCTTTCATTTCGAGGATGAAAAAGAATATGAGCACAAGCTTATTGAGAAGATTGTTGAGCGTGTCTTCAGCATTATTAGTAATGTTGAAGAAAGATTGCATGTTGCAGATTACCCAGTTGGACTAGAGTCACAGGTCCATGAAATAAGAAAGCTTTTGGATGTTGGAGATGATGATGGTGTCAACATGATAGGAATCCACGGAATGGGCGGTGTAGGGAAATCAGCACTTGCCCGGAGAGTTTATAATTTGATTACTCATCAATTTGAAGGTTCGTGTTTCCTTCAAAATGTAAGAGAAGAATCAAACAAACATGGGTTAAAACACCTCCAAAGCATCATTCTTTCACAGGTACTTGGAATGAAGGAAATCAACTTAGCAAGTGAGCAACAAGGAATTTCAATAATAAAAAATAGGCTCAAGCGAAAGAAGGTTCTCTTAATTCTGGATGATGTAGACAAGCACAAGCAATTACATGGAATTGTTGGAAGTCCTGAATGGTTTGGTCCCGGCAGCGTAGTCATCATCACCACTCGGGACAAACAACTTCTAGCATCTCATGAGGTTAAAAGAACACATGAGGTGAAGGAATTGAATGAGATAGATGCTCTTAAGTTGCTTAAATTTAAAGCTTTTAAAATGGAAGAAGTTGATCCAAGTTACGATGAGGTATTGAATCAGGTAGTAACTTATGCTTCCGGTATTCCACTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTGTTCAAGAATGGGAATCTGCTATCAAACAATACAAAAGAATTCCTAATAATAAAATCCTAGAGATCCTTAAAGTAAGCTTTGATTCATTGGGAGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATAAATTGACAGAGATTGAAGAGAAACTTCGTGCTCTTTATGATAACTGCATGAAGTACCATATTGGGGTGCTAGTTGAAAAGTCTCTCATAAAGTTTAGTCATGATGAAAGAGTCACATTTCATGACTTGATTGAGGACATGGGTAAAAGAATTGACCGTCAACAATCACCGAGAGAGCCAGGGAAGAGAAGGAGATTATGGTTACAGGAAGATATTATTCAAGTTTTGAAAGACAAATCGGGCACTAGTGAAATCAAAATTATCTGCCTGCATTTCTCCATATCCGACGATCAAGTAGTAGAATGGGATGGAAACGCTTTCACAGATATGAAAAGTCTTAAAATACTTATTGTTAGAAATGGTATCTTTTCCCAAATTTGGAATCATCTACCAGAAGGTTTGAAGGTACTAGAATGGAGGGCACAGGTAGTAGCTAATGGTTGCATCACATCATTGGAGTATGGTAGGTTATCCAAGGTTCAATTGTTTCCTTCTAAATGCAAGGATGATAAGGCTGCTGGTTACTATGAATAA 1875 0.3883 MAVTSPSQAYSYDVFLNFRGSDTRQGFTGFLYKALLDSGIHIFIDDEGIQSGKIITPELKEAIEKSRIAITVLSTNYASSSFCLDELEIILDCFKRTKLLVLPVFYKVPPSHVRHQQGSYGEALARLEEGLHHKMKNWKKALKKVANHSGFHFEDEKEYEHKLIEKIVERVFSIISNVEERLHVADYPVGLESQVHEIRKLLDVGDDDGVNMIGIHGMGGVGKSALARRVYNLITHQFEGSCFLQNVREESNKHGLKHLQSIILSQVLGMKEINLASEQQGISIIKNRLKRKKVLLILDDVDKHKQLHGIVGSPEWFGPGSVVIITTRDKQLLASHEVKRTHEVKELNEIDALKLLKFKAFKMEEVDPSYDEVLNQVVTYASGIPLALEVIGSNLFGKSVQEWESAIKQYKRIPNNKILEILKVSFDSLGEEEKSVFLDIACCFKGYKLTEIEEKLRALYDNCMKYHIGVLVEKSLIKFSHDERVTFHDLIEDMGKRIDRQQSPREPGKRRRLWLQEDIIQVLKDKSGTSEIKIICLHFSISDDQVVEWDGNAFTDMKSLKILIVRNGIFSQIWNHLPEGLKVLEWRAQVVANGCITSLEYGRLSKVQLFPSKCKDDKAAGYYE 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01306 624 Pfam NB-ARC domain 192 412 IPR002182 GO:0043531
Vian8g01306 624 SMART till_3 11 148 IPR000157 GO:0007165
Vian8g01306 624 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 177 - -
Vian8g01306 624 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Vian8g01306 624 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 591 IPR044974 GO:0006952
Vian8g01306 624 Gene3D - 346 430 IPR042197 -
Vian8g01306 624 PRINTS Disease resistance protein signature 381 395 - -
Vian8g01306 624 PRINTS Disease resistance protein signature 212 227 - -
Vian8g01306 624 PRINTS Disease resistance protein signature 288 302 - -
Vian8g01306 624 SUPERFAMILY "Winged helix" DNA-binding domain 416 524 IPR036390 -
Vian8g01306 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 440 IPR027417 -
Vian8g01306 624 Gene3D - 5 177 IPR035897 -
Vian8g01306 624 Pfam TIR domain 12 172 IPR000157 GO:0007165
Vian8g01306 624 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 151 IPR035897 -
Vian8g01306 624 Gene3D - 178 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01306 Vian-Chr8 32049819 32052371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01306 7 586 WRKY Transcription Factor Family AT4G12020 27.441 5.60e-53 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01306 - - vra:106770853 963.755