Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01304 ATGATAGGGATCCATGGAATGGGTGGGTTAGGGAAAACAACACTCTCTCTAGTAGTTTATAATTCGATTGCTGCTTATTTTGATGAATCATGTTTTCTTCAAAATGTAAGAAAAAATTCAAACAAAAATAGGTTACATCTCCTCCAAAGCATCTTTCTTTCAAAAATGCTTAGTGAGAAGAATATCATCTTAACAAGTTGGCAAGAAGGAGCATCAATGATACAGCAGAGGCTGGGGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACGACAGAGAGCAGTTACAAGCATTTGCTGGAAGAGCTGATTGGTTTGGTCCCGGCAGCAGGGTTATCATTACCACTCGGGACGAACAGCTGCTAAAATCTCATGGGATTAAAAGAACTTATGAGATGGAGGCATTGAATTTTGATGATTCTCTTCAATTGCTTATATGGAATGCTTTCGAAAGGGAAAAAGTTGATCCAAGTTACGAGGACGTGTTGAAACGTGTAGTAACTTATGCTTCTGGTCTTCCATTGGCTTTAAAAGTAATAGGTTCCAACTTGTATAGCAAAAGTGTAGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCAAACGGTGAAATTCTAGAGATACTTAAAGTAAGCTACGTTGCTTTGGGGGAAGAAGAAAAAAGCGTCTTTCTTGACATCGCCTGTTTCTTTAATGAAAGTAGTTTGGAAGAAGTTGAAAATATACTTGATGTTCTTTATGATAACGACATGAAACATCATATTGGGGTGTTGGTGGATAAATCTCTCATAGGTTTTTGGAGGGATGGAGAAGATTATATTGATATGCACGACTTGATTGAGGACATGGGTAGACATATTGAATGGCAAAAGTCACCCGAAGAGCCAGGGAAGCGCAGGAGATTATGGTTAAAGAAAGATATCCTTCATGTTTTAAAACACGACAAGGGTACTAGCAAAACTGAAATCATAATCCTGGATTTCGATTGGTCTATATATGAGCGAGAAAAAACGGTAGAATGGAATCCCAACGCCTTCAGAAGAATGAAAAACCTTAAAATACTTATCATTAGAGATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCGGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTCTTTACCATCAAATTTTGATCCGAGCAATCTTGTGACATGCAAGCTACCTCACAGTCATTTTACGTCATTTGAATTCCTTGACTCATCAAAGAAGTTCGAGAATCTATCTGTCTTGAATTTTGACTGCTGCAAATTTTTGACAAAGATACCAGATATGTCTGATTTCGTAAATTTGGAGGAAGTTTCATTTAACAGGTGTGAGAGTTTAGTTGCAGTTCACGACTCAATTGGTTTAATGAGTAAACTTAAAATATTGCAGGCGGAACATTGCATCAAGCTTACGAATTTTCCACCTCTCAACTTGCCCACTCTTGAAAGCCTAAAACTTTCATTTTGTTCCAGTCTTGAGAAATTTCCAGAAATACTAGAAAAGATGGAAAACATAAGGAAACTTGTATTGGAGAAGCTTCCCATTAAAGAATTGCCACTGTCGTTTCAAAATCTTATTGGACTCGAAGAGTTATTCTTGTCATCATGTAAAATTGTTCACTTGCCTAACTTGTCTACTTTGAGTGTTACTGAAGATAACGGAGGCTCAATGGTTCCTTCAAAGTTAGAGTGTTTTTCAGCACAGTCTTGCAACCTGAATGATAACTTCTTTTCGGCAGGTTTCATGCAGTTGGCACAAGTGCGTATTTTAAGTCTACGGGACAATAATTTCAAACACCTTCCTGAATGCATCAAAGAATTTCACAACCTCAACGAGCTTGATGTGAGTTATTGCAAACATCTTGAGGAAATAAGAGGGTTTCCACCAAAATTAGAACATTTCACTGCAACAAACTGTATATCTTTGACTTCCACCAGCTTAGACATGTTGCTAAATAAGGAACTATACGAATCTAGAAAATCTTGGTTCTGGTTTCCAGGAGCAAGGTTTCCAGAGTGGTTTGATCTCAAGAGCAGTGGACCTTCATGTTCTTTCTGGTTTCGTAATAAGTTTCCTGCCAGAGTTCTTTCTCTTCTTATTATACATATGAATAAAAATGATAACTTAAGTATCTTTTACCCTGCTGTGTACATTAATGGGAAATCTCAAACAGACGCAAGCATGTATTTGATGGAGCAGACGAAATTTGAATTCGATCTAACATACTTCTCTGATCTAAAAATGTATGGTAATTTGCATGAACAACCTTCAGAAAAGGAATGGAATCACGTGAAGGTTAAATATAATATTTCTATAGGTGCCTCTATAGTTAAAGCAACAGGAATCCATGTATTCGAGGAAAACAAGAAAGACATTCGGTTTGATGATCCTTATATCATGGAAGATATCATGGAAGAAGAAGAAAAGAGGAAGAAAAGGAAGAAGGAGAAGAAGAAGAGGAAGAAAAAGAAGAAAAGGCAGAAGAAGAAGAAAATAGCATCATGGAAGACACCATGGAAGAAGAAGGAAGAAGAGGAAAAAGAAGAAAACTGCATCAGGAATCCATGTATTCAAAGAGGAAAACAGCATCATGGAAGCAATTCGGTTTGA 2640 0.3708 MIGIHGMGGLGKTTLSLVVYNSIAAYFDESCFLQNVRKNSNKNRLHLLQSIFLSKMLSEKNIILTSWQEGASMIQQRLGRKKVLLILDDVDDREQLQAFAGRADWFGPGSRVIITTRDEQLLKSHGIKRTYEMEALNFDDSLQLLIWNAFEREKVDPSYEDVLKRVVTYASGLPLALKVIGSNLYSKSVEEWESAIEHYKRIPNGEILEILKVSYVALGEEEKSVFLDIACFFNESSLEEVENILDVLYDNDMKHHIGVLVDKSLIGFWRDGEDYIDMHDLIEDMGRHIEWQKSPEEPGKRRRLWLKKDILHVLKHDKGTSKTEIIILDFDWSIYEREKTVEWNPNAFRRMKNLKILIIRDGKFSKGPNYFPESLRVLEWHGYPSNSLPSNFDPSNLVTCKLPHSHFTSFEFLDSSKKFENLSVLNFDCCKFLTKIPDMSDFVNLEEVSFNRCESLVAVHDSIGLMSKLKILQAEHCIKLTNFPPLNLPTLESLKLSFCSSLEKFPEILEKMENIRKLVLEKLPIKELPLSFQNLIGLEELFLSSCKIVHLPNLSTLSVTEDNGGSMVPSKLECFSAQSCNLNDNFFSAGFMQLAQVRILSLRDNNFKHLPECIKEFHNLNELDVSYCKHLEEIRGFPPKLEHFTATNCISLTSTSLDMLLNKELYESRKSWFWFPGARFPEWFDLKSSGPSCSFWFRNKFPARVLSLLIIHMNKNDNLSIFYPAVYINGKSQTDASMYLMEQTKFEFDLTYFSDLKMYGNLHEQPSEKEWNHVKVKYNISIGASIVKATGIHVFEENKKDIRFDDPYIMEDIMEEEEKRKKRKKEKKKRKKKKKRQKKKKIASWKTPWKKKEEEEKEENCIRNPCIQRGKQHHGSNSV 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01304 879 Gene3D - 1 129 IPR027417 -
Vian8g01304 879 SUPERFAMILY "Winged helix" DNA-binding domain 206 315 IPR036390 -
Vian8g01304 879 Gene3D Ribonuclease Inhibitor 510 663 IPR032675 -
Vian8g01304 879 Gene3D - 135 219 IPR042197 -
Vian8g01304 879 Coils Coil 810 841 - -
Vian8g01304 879 MobiDBLite consensus disorder prediction 847 864 - -
Vian8g01304 879 SUPERFAMILY L domain-like 339 666 - -
Vian8g01304 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 229 IPR027417 -
Vian8g01304 879 PRINTS Disease resistance protein signature 77 91 - -
Vian8g01304 879 PRINTS Disease resistance protein signature 170 184 - -
Vian8g01304 879 PRINTS Disease resistance protein signature 1 15 - -
Vian8g01304 879 PRINTS Disease resistance protein signature 486 502 - -
Vian8g01304 879 ProSiteProfiles Leucine-rich repeat profile. 537 558 IPR001611 GO:0005515
Vian8g01304 879 Pfam NB-ARC domain 2 201 IPR002182 GO:0043531
Vian8g01304 879 MobiDBLite consensus disorder prediction 817 879 - -
Vian8g01304 879 Gene3D Ribonuclease Inhibitor 340 509 IPR032675 -
Vian8g01304 879 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 649 IPR044974 GO:0006952
Vian8g01304 879 MobiDBLite consensus disorder prediction 823 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01304 Vian-Chr8 31995768 31998748 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01304 2 623 WRKY Transcription Factor Family AT4G12020 32.344 1.41e-74 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01304 - - vra:106763192 1281.93