Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01262 ATGACTATATCAGTTCAATCATGTATACACTTTTCATGTCACATTTTTCTGGTTTTGTTCTTCTTCCTTGTTCACACAAGCTCACAATCTTTGAATGATCAAGAGCATGCAGTTTTGCTTAACATAAAGCAATATCTTGAAGACCCTTCTTTCCTCTCCCATTGGAATTCAACTTCCTCTCACTGTTCATGGCCAGAGATCACATGCACCACTGGCTCAGTCACTTCCCTCACCCTCTCCCATTCCAACATCAACAAAACTATACCATCCTTCATATGTGACCTCACCAACCTCACACACATTGACTTCAGCTTCAACCTCATCCCTGGTGACTTCCCCACACCCCTCTACAACTGCTCCAAGTTGGAGTACCTAGATCTTTCAGGGAACAACTTTGATGGCCAGGTTCCTCGTGAGATTGACCGTTTGGGTGCTAATTTGCAATATCTCAACCTTGGTTCTACCAATTTCCATGGTGATGTTCCTGCCAGTATTGGAAATTTGAACCAACTGAGACAGCTTAAACTTCAGTTTTGCTTATTGAATGGCACTGTTGCTGCTGAGATTGATAGCTTGCCCAATCTTGAGTACTTGGATTTGTCCTCTAACTTTTTGTTTCCTAAATGGAAGTTGCCTTGGAACTTGACCAAGTTCAACAAACTGAAGGTGTTTTATTTGTATGGCACCAACTTGGTTGGGGAAATCCCAGATAACATTGGAGATATGGTGGCTTTGGAGAAGCTGGATGCATCAAAAAATAACTTAACTGGAGGAATTCCAAGTGGTTTATTCTTGCTGAAGAATCTGACCTCACTCTATCTTTTTCAAAACAGCCTCTCAGGGGAGATACCAAGTGTGGTTGATGCATTAAACTTGGTCAACCTTGATCTTGCAACGAATGATCTCACAGGGAAAATACCAGATGATTTTGGAAAACTGCAACAGCTGGAATGGTTGAGTTTGTCTTTGAATAACTTGTCAGGTGTGATACCACAAAGCTTGGGCAGTCTTCCAGCTCTCATTGATTTTCGCGTGTTTTTCAACAAGTTATCAGGTACTCTTCCTCCTGATTTTGGCCGTTACTCAAAGCTTAAAACCTTTTTGATTGCATCTAATAATTTTACGGGGAAGTTACCGGATAACCTGTGCTATCATGGGATGTTACTTAATTTGTCTGTTTATGAGAATAAGCTGAGTGGTGAGTTGCCAGAATTTCTTGGAAATTGCAGTAGTTTGCTGGACCTGAAAATTCACGAAAATGAGTTTTCTGGTAACATTCCTAATGGTCTTTGGACATCTTTCAATTTGTCAAATTTCATGGTTAGCCATAACAAGTTCACTGGTGAGCTTCCTAAAAGGCTATCTTGGAATGTTTCGCGGTTTGAGATAAGTTACAATCAGTTTTCTGGTGGAATTCCTAGTGGAGTATCATCATGGACTAATTTGGTAGTGTTTGATGCCAGTAAGAACAATTTCAATGGAAGTATTCCAAAAGAGCTAACAGCTCTTCCTAAGTTAATAACCTTGTTGCTTGATCAGAACCAACTCACTGGGGCACTTCCATCAGATATAATATCATGGAAATCCTTGGTAACTCTAAATTTGAGCCAAAACCAACTCTCTGGACAAATCCCTCATGCAATTGCTCAGTTACCTGTCCTTAGTCAGCTTGATCTATCAGAAAATGAATTCTCTGGCCAAGTTCCTTCCCTATCTACCAGAGTCACCAATCTCAATTTGTCTTATAATCATTTAACTGGGAGAATTCAAAGGGAGTTTGAAAATTCTGCGTATGCTGGTAGCTTTTTGGGCAATTCTGGTCTTTGTTCTGACAACCCAGCACTGAACCTTACCTTGTGCAATTCTGGCCTTCAAAGAACAAGCAAGGACTCATCTTGGTCTATTGGTTTGATTATATGCTTGGCGGTAGCAGCCTTGTTACTGGCCCTTTTAGCATCACTCTTGTTTATTAGATTTCAAAGAAAGAGAAAGAAAGGATTAGATAACTCTTGGAAGCTCGTTTCCTTTCAGAGGGTGAATTTCACAGAATCAACCATTGTCTCATCAATGACAGAACAAAACATTATTGGTAGTGGTGGATATGGTACAGTATATCGCATTGATGTTGGTTCAGACTATGTTGCTGTGAAAAAGATTTGGAATAACAGAAAGTTAGACAAGAAGCTTGAGAGCTCCTTCCGTGCAGAAGTTAGAATATTGAGCAGCATTCGTCATACCAACATTGTGAGGTTGATGTGTTGTATCTCTAATGAAGATTCTATGCTCCTTGTATATGAGTATCTGGAAAATCTCAGCCTAGATAAGTGGCTGCATAAGAGTGTTAAACCAGGTTCAGCCAATAAAGTGCCAGAGGAACTAAGCAGCATGTCAGCTGTTATTGGCTCATTTGGCTATATTGCTCCAGAATTTGTGCAATCAACCAGAGTTAGTGAAAAGATTGACGTGTTCAGCTTTGGAGTAGTGCTATTAGAACTGACAACCGGTAAAGAAGCAAGTTATGGAGACCAACATTCATCTCTTTCAGAGTGGGCGTGGCGTCACATTCTGATTGGAGGCAATGTTGAAGAATTGCTAGACAAAAATGTCACTGAAGCCAGTTACTTAAATGAAATGTGCACTGTTTTCAAACTTGGTGTCATGTGCACTGCAACACTGCCTACCAGTAGGCCTTCCATGAAGGATGCCCTACAAATATTGCAAAGCTTAGCAGAACCATTATTTTATGCAGAGAAGGGCTTTGACCACTACTATGATGCGAGGCCCCTTCTTAAGAGTTCAAAGGAAACTATATTGAATGTTGATCATGATAGTGAATGA 2838 0.4035 MTISVQSCIHFSCHIFLVLFFFLVHTSSQSLNDQEHAVLLNIKQYLEDPSFLSHWNSTSSHCSWPEITCTTGSVTSLTLSHSNINKTIPSFICDLTNLTHIDFSFNLIPGDFPTPLYNCSKLEYLDLSGNNFDGQVPREIDRLGANLQYLNLGSTNFHGDVPASIGNLNQLRQLKLQFCLLNGTVAAEIDSLPNLEYLDLSSNFLFPKWKLPWNLTKFNKLKVFYLYGTNLVGEIPDNIGDMVALEKLDASKNNLTGGIPSGLFLLKNLTSLYLFQNSLSGEIPSVVDALNLVNLDLATNDLTGKIPDDFGKLQQLEWLSLSLNNLSGVIPQSLGSLPALIDFRVFFNKLSGTLPPDFGRYSKLKTFLIASNNFTGKLPDNLCYHGMLLNLSVYENKLSGELPEFLGNCSSLLDLKIHENEFSGNIPNGLWTSFNLSNFMVSHNKFTGELPKRLSWNVSRFEISYNQFSGGIPSGVSSWTNLVVFDASKNNFNGSIPKELTALPKLITLLLDQNQLTGALPSDIISWKSLVTLNLSQNQLSGQIPHAIAQLPVLSQLDLSENEFSGQVPSLSTRVTNLNLSYNHLTGRIQREFENSAYAGSFLGNSGLCSDNPALNLTLCNSGLQRTSKDSSWSIGLIICLAVAALLLALLASLLFIRFQRKRKKGLDNSWKLVSFQRVNFTESTIVSSMTEQNIIGSGGYGTVYRIDVGSDYVAVKKIWNNRKLDKKLESSFRAEVRILSSIRHTNIVRLMCCISNEDSMLLVYEYLENLSLDKWLHKSVKPGSANKVPEELSSMSAVIGSFGYIAPEFVQSTRVSEKIDVFSFGVVLLELTTGKEASYGDQHSSLSEWAWRHILIGGNVEELLDKNVTEASYLNEMCTVFKLGVMCTATLPTSRPSMKDALQILQSLAEPLFYAEKGFDHYYDARPLLKSSKETILNVDHDSE 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01262 945 FunFam Receptor-like protein kinase HSL1 isoform A 296 620 - -
Vian8g01262 945 ProSitePatterns Protein kinases ATP-binding region signature. 696 718 IPR017441 GO:0005524
Vian8g01262 945 Gene3D Phosphorylase Kinase; domain 1 670 767 - -
Vian8g01262 945 FunFam Receptor-like protein kinase HSL1 isoform A 32 183 - -
Vian8g01262 945 Gene3D Transferase(Phosphotransferase) domain 1 768 918 - -
Vian8g01262 945 SMART LRR_sd22_2 95 127 - -
Vian8g01262 945 SMART LRR_sd22_2 266 292 - -
Vian8g01262 945 SMART LRR_sd22_2 192 217 - -
Vian8g01262 945 FunFam Receptor-like protein kinase HSL1 670 767 - -
Vian8g01262 945 SUPERFAMILY Protein kinase-like (PK-like) 690 918 IPR011009 -
Vian8g01262 945 Gene3D Ribonuclease Inhibitor 147 209 IPR032675 -
Vian8g01262 945 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 901 - -
Vian8g01262 945 Pfam Protein kinase domain 784 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01262 945 Pfam Protein kinase domain 692 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01262 945 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Vian8g01262 945 Gene3D Ribonuclease Inhibitor 388 626 IPR032675 -
Vian8g01262 945 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 188 288 - -
Vian8g01262 945 SUPERFAMILY L domain-like 389 594 - -
Vian8g01262 945 SUPERFAMILY L domain-like 65 453 - -
Vian8g01262 945 ProSiteProfiles Protein kinase domain profile. 690 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01262 945 Gene3D Ribonuclease Inhibitor 33 146 IPR032675 -
Vian8g01262 945 SMART LRR_typ_2 192 218 IPR003591 -
Vian8g01262 945 SMART LRR_typ_2 313 336 IPR003591 -
Vian8g01262 945 SMART LRR_typ_2 242 266 IPR003591 -
Vian8g01262 945 SMART LRR_typ_2 503 527 IPR003591 -
Vian8g01262 945 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Vian8g01262 945 Pfam Leucine rich repeat 74 132 IPR001611 GO:0005515
Vian8g01262 945 Gene3D Ribonuclease Inhibitor 210 387 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01262 Vian-Chr8 31611966 31615301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01262 788 932 Receptor kinase-like Gene Family AT5G25930 51.034 5.92e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian8g01262 Pkinase 3.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01262 - - gmx:100789972 1491.09