Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01258 ATGGTGTTGTGCGTTGAAATTGGGGAATTCTTTCCAGAAGAAAGAGATGCTTTGATACTCATAAGGGATTCTTTGAATTCATCTGTGAATTTGCATGGGAATTGGACAGGCCCTCCTTGTATAGACAGTCTGAGTAGGTGGATTGGAATCACTTGCTCAAATTGGCATGTTGTTCAAATTGTTCTTGAAGGAGTTAACCTTAGTGGTTATCTACCTCCCACATTTCTTCAAAACATAACTCTCTTGAGCCAACTTGACTTCAGAAATAATGCACTTTTTGGACCATTGCCAAGCCTCAAGAATTTGGTGTTTTTGGAACAAGCCCTTTTATCATTCAATCATTTCTCAGGGTCAATTCCTGTGGAGTATGTTGAACTTACCAGTCTGAGAGTGTTGGAGCTGCAAGAGAATTACTTACATGGTCAAATTCCACCCTTTGATCAACCATCATTGACAAGTTTCAATGTGTCATATAATCATCTGTCAGGGCCTATTCCTGAAACTTCTGTGCTGATGAGGTTCCCAGAGAGTTCTTATGAAAATAATTCAGATCTTTGTGGAGAGCCATTGAATAAGTTATGTCCTATTCAACCTCCTGCCCCATCTCCAGCACCATTTTCTGCACCGCCTCCTTTTGCTATGCCTCCAATTCCAGCAGTGAAGCCAAATAACAGGTTTCAAGCATGGACTGTTGCTGTGATTGGTGCTGCAGCTGCACTGATTCTTCTTTCTCTGATCAGTTTTATTGCTTTCTTGTTTCGTAAAAGACAAACAAGTGGAAAAGAAGTAAGAAGAGATGATTCAGCTGGGCATGTTTTTGGGGCATGGGCAAAGAAGATGGTGGCTTCTGCTGGGGGCAGTGATGTTTCTGAGAGATTAGGCAGATTGGAATTTTCCAACAAGAAACTACCAGTTTTTGACTTGGATGATTTATTAAGGGCATCAGCAGAAATTCTAGGAAGAGGGAACTTAGGTATTACGTACAAAGCAACTCTTGAAACTGGAACTGTTGTTGCAGTGAAGAGACTTAACCACATGAATGAACTGAGCAAGAAGGAATTTCTCCAGCAGATCCAATTGCTAGGACAGATGAAGCATGAAAATATAGCAGAAATAATCTCCTTTTATTATTCAGAGGAGCAAAAGTTGGTCATATATGAATTTACCTCTGATGGCACTTTGTTTGAACTACTACATGAGGGTAGAGGAATTGGAAGAATGCCACTTGATTGGACCACAAGACTTTCTAGCATCAAAGACATAGCAAAGGGTCTTCTTTTTCTTCATCATTCCTTGCCTTCTCAAAAGGTTCCTCATGCCAACCTCAAGTCATCCAATGTCCTAATCCATCAAGATAGTAAAGGGTACCATTCCAAGCTCACAGATTATGGTTTCTTGCCTCTACTCCCAGCCAAACAGAATGCAGAAAAACTAGCCATAAGGAGGTCACCAGAATTTGTTCAAGGGAAGAAGCTAACACGCAGTGCTGATGTTTATTGCTTTGGCATCATTGTGCTAGAGATTGTAACCGGCAAAATCCCTGGCCATATCATTGGTGAAATTGAAGAGACTACCAATGATCTTTCAGATTGGGTAAGAACTGTGGTGAACAATGATTGGTCCACAGATATATTGGATTTAGAAATACTTGCAGAAAAAGAAGGGCATGATGCAATGTTAAAGCTAACAGAGTTAGCTCTAGAGTGTACTGATATGACACCAGAAAAGAGGCCTAAAATGAGTGTAGTGTTGATGAGAATAGAAGAGATAGAGAAAATGAAAAAGGAGAGTGACTAA 1797 0.4029 MVLCVEIGEFFPEERDALILIRDSLNSSVNLHGNWTGPPCIDSLSRWIGITCSNWHVVQIVLEGVNLSGYLPPTFLQNITLLSQLDFRNNALFGPLPSLKNLVFLEQALLSFNHFSGSIPVEYVELTSLRVLELQENYLHGQIPPFDQPSLTSFNVSYNHLSGPIPETSVLMRFPESSYENNSDLCGEPLNKLCPIQPPAPSPAPFSAPPPFAMPPIPAVKPNNRFQAWTVAVIGAAAALILLSLISFIAFLFRKRQTSGKEVRRDDSAGHVFGAWAKKMVASAGGSDVSERLGRLEFSNKKLPVFDLDDLLRASAEILGRGNLGITYKATLETGTVVAVKRLNHMNELSKKEFLQQIQLLGQMKHENIAEIISFYYSEEQKLVIYEFTSDGTLFELLHEGRGIGRMPLDWTTRLSSIKDIAKGLLFLHHSLPSQKVPHANLKSSNVLIHQDSKGYHSKLTDYGFLPLLPAKQNAEKLAIRRSPEFVQGKKLTRSADVYCFGIIVLEIVTGKIPGHIIGEIEETTNDLSDWVRTVVNNDWSTDILDLEILAEKEGHDAMLKLTELALECTDMTPEKRPKMSVVLMRIEEIEKMKKESD 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01258 598 Gene3D Ribonuclease Inhibitor 11 196 IPR032675 -
Vian8g01258 598 Pfam Protein kinase domain 316 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01258 598 ProSiteProfiles Protein kinase domain profile. 313 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01258 598 Gene3D Phosphorylase Kinase; domain 1 283 388 - -
Vian8g01258 598 Pfam Leucine rich repeat N-terminal domain 13 53 IPR013210 -
Vian8g01258 598 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 596 IPR046959 -
Vian8g01258 598 SUPERFAMILY Protein kinase-like (PK-like) 317 587 IPR011009 -
Vian8g01258 598 FunFam Leucine-rich repeat receptor-like protein kinase 104 196 - -
Vian8g01258 598 Gene3D Transferase(Phosphotransferase) domain 1 390 598 - -
Vian8g01258 598 SUPERFAMILY L domain-like 12 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01258 Vian-Chr8 31561604 31563654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01258 34 597 Receptor kinase-like Gene Family AT1G68400 34.198 4.51e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian8g01258 Pkinase 2.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01258 - - gmx:102668068 970.304