Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01257 ATGCACGAGTCAGCCAAACCTCTGAAACCGCAACCGCAAGGCTTAGCTGGTGGCTGCACTTTGGTTTTTGTCCTGTTCAGAAAATGTAGATTGACGTGTGTGACAACCTTAGTTGGTAGTCCTAAGGAGTTGTGCAAGAGTGAGCTTAATTTGCTGATGGCAACCCGCAGATATGCTTTTGGAAGGGCTGATGAGGCCACTCATCCTGACTCCATGAGGGCCACTTTGGCTGAATTTGCCTCAACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGTTAAGATTTACCAGGATTCAGCTTTCTCAGCTGGTGAACTGTTAGCACTTGCACTTGCCCATGCATTTGCTCTATTTGCTGCTGTATCTGCTAGCATGCATGTATCAGGTGGCCATGTCAACCCAGCTGTGACATTCGGTGCTCTCGTTGGGGGGAGGATCTCTGTTGTTCGTGCAGTATACTACTGGGTTGCTCAACTTCTGGGTTCTATTGTGGCTGCTCTTGTGCTCAGGCTTGTCACTAATAACATGAGACCATCAGGGTTCCACATAGCACCAGGTGTTGGAGTAGGACACATGTTTATACTTGAGATTGTGATGACATTTGGGCTGATGTATACTGTATATGCTACTGCAATAGATCCCAAAAGGGGCGCTGTTAGCAATATCGCACCCTTGGCAATTGGGCTCATTGTTGGAGCAAACATCCTTGTTGGTGGGCCATTTGATGGAGCATGCATGAACCCTGCTCTGGCTTTTGGACCTTCCCTAGTGGGCTGGAGATGGCACCAGCACTGGATCTTCTGGGTGGGTCCATTGATTGGGGCAGCACTGGCAGCACTGGTGTATGAATATGCTGTGATCCCAATTGAACCTCCCCCACACCACCACCAGCCCTTGCCTTCTGAAGATTACTAA 927 0.4898 MHESAKPLKPQPQGLAGGCTLVFVLFRKCRLTCVTTLVGSPKELCKSELNLLMATRRYAFGRADEATHPDSMRATLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVTFGALVGGRISVVRAVYYWVAQLLGSIVAALVLRLVTNNMRPSGFHIAPGVGVGHMFILEIVMTFGLMYTVYATAIDPKRGAVSNIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHQHWIFWVGPLIGAALAALVYEYAVIPIEPPPHHHQPLPSEDY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01257 308 ProSitePatterns MIP family signature. 135 143 IPR022357 -
Vian8g01257 308 Gene3D Glycerol uptake facilitator protein. 56 294 IPR023271 -
Vian8g01257 308 NCBIfam MIP family channel protein 77 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian8g01257 308 CDD MIP 73 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian8g01257 308 SUPERFAMILY Aquaporin-like 65 301 IPR023271 -
Vian8g01257 308 PRINTS Major intrinsic protein family signature 117 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian8g01257 308 PRINTS Major intrinsic protein family signature 269 289 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian8g01257 308 PRINTS Major intrinsic protein family signature 199 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian8g01257 308 PRINTS Major intrinsic protein family signature 232 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian8g01257 308 PRINTS Major intrinsic protein family signature 154 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian8g01257 308 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian8g01257 308 PANTHER AQUAPORIN-8 58 298 IPR034294 -
Vian8g01257 308 FunFam Probable aquaporin TIP1-1 56 306 - -
Vian8g01257 308 Pfam Major intrinsic protein 66 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01257 Vian-Chr8 31557930 31559712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01257 54 308 Major Intrinsic Protein MIP AT1G73190 70.455 4.28e-122 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01257 K09873 - gmx:100817450 455.677