Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01220 ATGGCAACTCAGATGAGTAAGAAGAGAAAGTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAATGAGGTCCTGACACGTGAGTTGGCGGAGGATGGTTATTCCGGTGTCGAGGTTAGGGTTACGCCTATGCGCACAGAGATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGGTGAGAAGGGAAGGAGAATTAGGGAACTGACCTCAGTGGTCCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAGCTGTATGCGGAAAAGGTGAACAACAGAGGTCTATGTGCCATTGCTCAGGCCGAATCTCTTCGCTACAAGCTCCTCGGTGGTCTTGCTGTTCGCAGGGCTTGCTATGGTGTTTTAAGATTTGTGATGGAAAGCGGTGCCAAGGGATGCGAGGTCATTGTTAGTGGAAAACTGAGAGCTCAGAGAGCCAAATCCATGAAATTCAAGGATGGGTATATGATTTCTTCTGGACAACCAGTCAAGGATTACATCGACTCTGCAGTGAGACATGTGCTCCTTAGACAGGGTGTTCTTGGTATAAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAGACTCCCCTCCCAGATATTGTCACAATCCACACTCCCAAAGAGGAAGAATACAGTCAGCCTGCTACTGCTACTGCTCCTGTTTTGGCCAACGACATTGAGGTTCCTGTTGCTTAA 717 0.484 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEYSQPATATAPVLANDIEVPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01220 238 CDD KH-II_40S_S3 5 95 - -
Vian8g01220 238 FunFam 40S ribosomal protein S3 93 227 - -
Vian8g01220 238 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Vian8g01220 238 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Vian8g01220 238 Gene3D - 93 220 IPR036419 -
Vian8g01220 238 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Vian8g01220 238 FunFam 40S ribosomal protein S3 1 92 - -
Vian8g01220 238 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Vian8g01220 238 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Vian8g01220 238 Pfam KH domain 20 93 IPR004044 GO:0003723
Vian8g01220 238 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Vian8g01220 238 Gene3D - 1 91 IPR015946 -
Vian8g01220 238 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01220 Vian-Chr8 30880410 30886139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01220 1 228 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 89.956 1.05e-152 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01220 K02985 - gmx:100799156 439.884