Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01201 ATGGCTGTAAGATCGCACTCCCAAGAATTCACCTACGATGTGTTCCTCAACTTCAGAGGCTCAGACACACGCTATGGTTTTGCTGGCAATCTCTACAAAGCTCTGGATGACAGGGGAATCCACACTTTCATTGATGACAAGAAGCTTCGGGGTGGAGATGAACTAGCACCAACACTTGTGAAGGCAATTCAAGAGTCCAGGATTGCCATCACTGTGCTTTCTATCACCTATGCTTCTTCTTCATTTTGTTTAGATGAACTGGTTTACATCCTTGACCGTGCTGACGAAAAAAAGTTGCTGGTTTTGCCAGTTTTTTATAACGTGGATCCTTCTTTTGTGAGGCACCAAAAAGGAAGTTTTGGTGAAGCATTGGCTTGGCATGAGGAAAGGCTCAAAGCTGATAATAAGGAGAGGTTAAACCATCACATGGAGAAGTTGGAGAAATGGAAGATGGCTCTTCATCAAGTAGCTAACTTGTCTGGCTTTCATTACAAATATGGAGAAGGATATGAATACAAGTTTATTGGGAAGATTGTTGAGTGGGTCTCTAGTGAGATTAATCGTGCTCCTTTACATGTGGCGGATTACCCGGTTGGATTAGACTCACAAGTGTTAAAAGTAATGAAGCTTTTGGATGTAGGATCTAGTGATGGTGTCCTCTTGATAGGGATCTATGGAATGGGAGGGGTAGGGAAAACGTCACTTGCTTCAGCAGTTTATAATTTGATTGCTAGCCATTTTGATGGTTCCTGTTTTCTTCAAAATGTGAGAGAGAAATCACGCAAACACGGATTAGTACATCTTCAAAGCATCATTCTTTCCGAAATGCTTGGAGATAAGAGAATTATGTTTGAAAGTGAGCAACAAGGAATTTCAATGATACAACACAGGCTCCAACACAAGAGGCTTCTTTTGATTTTAGATGATGTTGACAAACATGAGCTGTTGCAGACACTTGTTGGAAGGCCTGACTGTTTTGGTCCTGGAAGCAAAGTCATCATCACCACTCGGGACAAACAACTGCTGGCATCTCATCATGTTCAAAAAACATATAAGGTGAAGAAATTAAATAAGAACCATGCTCTTCAATTGCTTACATGGAAAGTTTTCAAATCAGAACAAGTTTATCCAGAATACGAGGAGGTGCTTAATCGTGCAGTAACTTATGCTTGTGGCCTTCCATTGGCTTTGGAAGTAATAGGTGCCAACCTGTGTGGAAAAAGTATACAAGAATGCAAATCTGTCATAGATCAATATAAAAGAATTCCAAACAATCGAATCCAAGAGACTCTTAAAGTAAGCTTCGATGCTTTGCAGGAAGAAGAGAAGAGAGTTTTTCTTGACATTTCTTGTTGCTTCAAAGGATATAAATTAACCGAAGTTGAAGATATACTTCATGCTCATCATGGTGCTTGTATGAAATATCATATTGGCGTGTTGGCTGAAAAATCTTTCATAAAGATTGGTCAGTATGATTGTGTTACATTGCATGACTTGGTAGAGGACATGGGTAAGGAAATTGTCAGACAAGAGTCACCAGAAGAACCAGGGAAGCGCAGTAGGTTATGGTCACCAAAAGATATAATCCAAGTTTTGGAAGACAACACTGGAACAAGTGAAATTAAAATCATATGTCTGGATTTCCCCTTGTTTGAAAAGAAAATGGTAGAATGGAATGGGATGGCTTTCCAGAAGATGCAAAACCTCAAAACACTTATTATTAGAAATGGAATTTTTTCTGATGATCCCAAATGTTTTCCAAATAGTTTGAGAGTGTTGGAATGGTGGAGATATCCTTCACATTGTTTACCATCTTATTTTCAACCAAAACAGCTTGCAATATGCAAGTTACCCCATAGTCTCTTTATGTCATTTGAGATGGATGGATTAAGCAAGAAGCTCAGGAATCTACGGGTTTTGAATTTTGACTGCTGTGAATGTTTAACTCAGATACCTGATGCCGTATCTGATCTCCAAAATTTGGAGGAACTTTCATTTCAAAATTGTGTAAATTTAGTTAGAGTTCATAATTCGGTTGGTTTGCTGGAGAAACTGAGGATATTGGAAGCTTCTGGTTGCATCAAGCTTAGGAATTTTCCACCCCTGAAGTTGACTTCTCTTGAAAAACTTGAACTTTCACATTGTTCTAGTCTTGAGAGGTTTCCAGAAATTATAGGAAAGATGGAAAACATAAGGGAACTTCGGTTGCTAGGAACTCTCATAAAAGGGTTGCCACTTTCATTTCAAAATCTAACTCGGCTTAAAAAGTTGTCCCTGCTATTCTGTGGAATTGTTCAGTTACAAAGCAGCATTGTCATGATGCCAGAACTGACACTTATTGAGGCTTGGGGATGGGAAGGGTGGCAGTGGATAAAGTGGGAAGAGGACGAAGAAAAAGATGGCTCAATGGTATCTTCAAAAGTAGAATTGCTTTGGGCGCCAAAATGCAACCTGCGTGATGATTTTTTTCAAATAGGTTTCACACGGTTTGCTCATGTGAAAGATTTAGACCTATCGAACAATAATTTCACACAGCTTCCTGAATGCATCAAAGAATGTCAATTTTTAAAAAAGCTTGACGTGAGTTGTTGCAAGCATCTTCGGGAAATCAGAGGAATCCCACCAAAGTTGAAACATTTCAACGCAACAAACTGTTTATCGCTGACACCCTCGAGTATAAGCATTTTCCTAAACGAGGATCTGCATGAGAATCGAAAAACTATGTTAGTTTTGCCAGGATCTAGGAACCCTGAATGGTTCAATTACTTAAGTTATGAACCTTCAAGTTCTTTCTGGATTCGCAACAAATTCCCTGGCAAAGTTCTTTGTCTTTTTGTTGCACCGAAGGATGGAGACATTAGTGATTATGTTAAACTCATGTTGGTCATCAATGACAAAGTTTATGTATGTTTCTTTGATAGGCTCAAGTTCTTGAAGTTGGGAGCAGAACACACATTTCTTTTCGATCTACGAAATTTAATTTTCACCAACAATCTGTATGAAGTGCCTTTAGAGAATGAATGGAACCATGTGAAGGTTATATATTTTGATTCGAAAGCAGCCTCAATGCCTATAGAAAGCGGAATCCATGTATTCAAGCAGGAAAGTAGCGATGAAGATATTATGTTCACTGATCCTTATGCAAAGACCCGATCCGCTTCTCCATCTAGTATTTTTGACTTCGGTTTGAACATTGATCCGGCCTTTGAAACGTGGGATTTCTTCTTTGGAAAATCGGAGCCCTAG 3246 0.3909 MAVRSHSQEFTYDVFLNFRGSDTRYGFAGNLYKALDDRGIHTFIDDKKLRGGDELAPTLVKAIQESRIAITVLSITYASSSFCLDELVYILDRADEKKLLVLPVFYNVDPSFVRHQKGSFGEALAWHEERLKADNKERLNHHMEKLEKWKMALHQVANLSGFHYKYGEGYEYKFIGKIVEWVSSEINRAPLHVADYPVGLDSQVLKVMKLLDVGSSDGVLLIGIYGMGGVGKTSLASAVYNLIASHFDGSCFLQNVREKSRKHGLVHLQSIILSEMLGDKRIMFESEQQGISMIQHRLQHKRLLLILDDVDKHELLQTLVGRPDCFGPGSKVIITTRDKQLLASHHVQKTYKVKKLNKNHALQLLTWKVFKSEQVYPEYEEVLNRAVTYACGLPLALEVIGANLCGKSIQECKSVIDQYKRIPNNRIQETLKVSFDALQEEEKRVFLDISCCFKGYKLTEVEDILHAHHGACMKYHIGVLAEKSFIKIGQYDCVTLHDLVEDMGKEIVRQESPEEPGKRSRLWSPKDIIQVLEDNTGTSEIKIICLDFPLFEKKMVEWNGMAFQKMQNLKTLIIRNGIFSDDPKCFPNSLRVLEWWRYPSHCLPSYFQPKQLAICKLPHSLFMSFEMDGLSKKLRNLRVLNFDCCECLTQIPDAVSDLQNLEELSFQNCVNLVRVHNSVGLLEKLRILEASGCIKLRNFPPLKLTSLEKLELSHCSSLERFPEIIGKMENIRELRLLGTLIKGLPLSFQNLTRLKKLSLLFCGIVQLQSSIVMMPELTLIEAWGWEGWQWIKWEEDEEKDGSMVSSKVELLWAPKCNLRDDFFQIGFTRFAHVKDLDLSNNNFTQLPECIKECQFLKKLDVSCCKHLREIRGIPPKLKHFNATNCLSLTPSSISIFLNEDLHENRKTMLVLPGSRNPEWFNYLSYEPSSSFWIRNKFPGKVLCLFVAPKDGDISDYVKLMLVINDKVYVCFFDRLKFLKLGAEHTFLFDLRNLIFTNNLYEVPLENEWNHVKVIYFDSKAASMPIESGIHVFKQESSDEDIMFTDPYAKTRSASPSSIFDFGLNIDPAFETWDFFFGKSEP 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01201 1081 Pfam NB-ARC domain 203 429 IPR002182 GO:0043531
Vian8g01201 1081 SUPERFAMILY "Winged helix" DNA-binding domain 426 533 IPR036390 -
Vian8g01201 1081 SUPERFAMILY L domain-like 510 894 - -
Vian8g01201 1081 Gene3D - 4 186 IPR035897 -
Vian8g01201 1081 Gene3D - 355 439 IPR042197 -
Vian8g01201 1081 Gene3D Ribonuclease Inhibitor 546 917 IPR032675 -
Vian8g01201 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 449 IPR027417 -
Vian8g01201 1081 Pfam TIR domain 12 165 IPR000157 GO:0007165
Vian8g01201 1081 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 188 - -
Vian8g01201 1081 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 162 IPR035897 -
Vian8g01201 1081 PRINTS Disease resistance protein signature 390 404 - -
Vian8g01201 1081 PRINTS Disease resistance protein signature 297 311 - -
Vian8g01201 1081 PRINTS Disease resistance protein signature 702 718 - -
Vian8g01201 1081 PRINTS Disease resistance protein signature 221 236 - -
Vian8g01201 1081 Gene3D - 187 352 IPR027417 -
Vian8g01201 1081 SMART till_3 11 159 IPR000157 GO:0007165
Vian8g01201 1081 ProSiteProfiles TIR domain profile. 10 186 IPR000157 GO:0007165
Vian8g01201 1081 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 765 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01201 Vian-Chr8 30691354 30695236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01201 12 759 WRKY Transcription Factor Family AT4G12020 30.502 1.87e-71 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01201 - - vum:124820577 1979.14