Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01197 ATGGCTTCCCTTGCAGCTTCCACCGCTGCTGCATCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACCTCAGTGGTGCCACAAGGCCTGCTCCATCTCCCTCTAGCCCTGCCTCCTTCAAGACTGTGGCTCTTTTCTCCAAAAAGAAGGCAGCATCAACTCCCCCCAAAAAAGCTGCTGCTGTTTCTCCTGCCAATGATGAACTTGCCAAGTGGTATGGTCCTGATAGAAGGATCTTCTTGCCAGAGGGTCTCTTGGACCGATCTGAGATCCCAGAGTACTTGACTGGAGAAGTCCCCGGAGATTATGGTTATGACCCTTTTGGTCTCAGCAAGAAGCCAGAGGACTTTGCCAAATATCAGGCATTTGAGTTGATTCACGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGGGGTACGTTGAACTACTTTGGGAAACCCATTCCCATCAATCTTATTGTGGCTGTCATTGCTGAGATAGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTACTAATGGCCTGAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGACTTGCAAATGATCCAGATCAGGCTGCACTGCTAAAGGTGAAGGAAATCAAGAATGGTAGACTTGCTATGTTTGCCATGCTTGGTTTCTACTTCCAAGCCTATGTGACTGGAGAAGGCCCTGTTGAGAACCTTGCAAAGCATCTCAGCGACCCTTTTGGCAACAACTTGCTCACAGTCATTGCTGGAAATGCTGAAAGAGCTCCAACTCTCTAA 876 0.484 MASLAASTAAASLGMSEMLGNPINLSGATRPAPSPSSPASFKTVALFSKKKAASTPPKKAAAVSPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRITNGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGNAERAPTL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01197 291 Gene3D Chlorophyll a/b binding protein domain 80 291 - -
Vian8g01197 291 Pfam Chlorophyll A-B binding protein 93 254 IPR022796 -
Vian8g01197 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 36 280 IPR001344 GO:0009765|GO:0016020
Vian8g01197 291 FunFam Chlorophyll a-b binding protein, chloroplastic 80 291 - -
Vian8g01197 291 SUPERFAMILY Chlorophyll a-b binding protein 72 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01197 Vian-Chr8 30671747 30674035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01197 11 291 Chloroplast and Mitochondria Gene Families AT4G10340 82.624 6.01e-155 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01197 K08916 - gmx:100806585 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01197 8 30671747 30674035 Vian8g01197 8 30671747 30674035 ECH