Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01196 ATGGTTTGTTCAGTGCATCTGCTTCCGCTTCTCTTCCTCCTCCTCCTCCTGGCTTTGCTCTTGAATCCAACATGTGTCTGTGGCAATGACGAGCTTAGAGCTCTGATGGACCTGAAATCCAGTTTGGATCCAGAGGGGCGATTTCTGTCCTCATGGACCATGGATGGAAACCCCTGTGGTGGTTACTTTGAGGGAGTCGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTCTGCAGGGGAAAGGCCTTTCTGGGAGGCTTTCACCGGCCATTGGTGGACTTAAGCACTTGACAGGACTCTACTTGCATTACAATTCTTTGTATGGGGAGATTCCAAGGGAAGTTGCAAACTTGACTGAGCTTAGTGACTTGTACCTGAATGTCAATCATTTGTCTGGTGAAATCCCACCTGAGATTGGCAAGATGGAGAAGCTTCAAGTTTTGCAGCTCTGTTATAATCAGTTAACAGGAAGCATACCTACACAGCTTGTCGATTTGAAAAAGCTCAGTGTTCTTGCTCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTACCCTAGGAGATTTGGAAATGTTGACGAGGCTAGATTTGAGTTCTAATAATCTCTTTGGTTCCATTCCCACTAAACTAGCCAATCTCCCTTCACTGCAAGTTCTGGATGTTCACAACAACACTCTCTCTGGGAATGTACCTACTGCTTTGAAGAGACTAGAGAATGGATTTGTGTATGAAAACAATGTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCACTGCTTCAAATAATGTTAATCTCACTCGACCAGAACCTTATGGAGCAGGAGTTGGAAGTATCTCTAGGGATATCCCAGAGACTGCTAATGTAAAGTTGCCTTGCAATACAACTCATTGCCAAAATCCATCTAAATCCAAACAAGCCACATCTATCACAGTTGCCATTGTTCTAGTAACAATTGCAGTATCAGCAATTGGTGTTTTGACCTTCACCGTGTATAGGCGGCGGAAACAAAAGCTTGGAAGTGCCTTTGATACTTCTGAAGGCCGACTAAGTACAGATCAAGCCAAGACTATATACAGGAAAAATGGATCTCCTTTGGTTAGCCTTGAGTATTCTAATGGGTGGGACCCTTTGGCTGATAGCAGGAATTTCAACGGGGATAAGCAAGATTTGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAGCAACTTTAGTGCTACATATAAAGGGGTTTTGAGAGATGGATCTGCTGTTGCTATCAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAGTTTTTGAAGGGATTGAACATTTTGACCTCACTGAGAAATGAACATCTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGAGAATGCTTTCTGGTCTATGATTTTGTTCCTAATGGAAACCTTACACGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTTCTTGAATGGTCAACTAGAATTTCTATTGTGAAAGGAATTGCTAAAGGTATAGCATATTTACATGCACACAAATCAAACAAACCAGCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTACTCGATCGGCGGTACAACCCGATGCTTTCAGATTCCGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCACTAAAGGGTAGTGCAGCAAAGGGATACTTGGCTCCAGAATACACCACAACCGGCCGGTTCACGGAGAAAAGTGATGTTTATGCATTTGGAGTGCTTCTTTTCCAGATTATCACAGGGAAACAGAAGATCACAAGTGCAATGCGCCTTGCAGCAGAGTCCTTTACATTCCAAGAATTTATTGACCCGAACTTGCGTGGCAAGTTCTTTGAATATGAGGCAGCTAAACTAGCCAAAATGGCTTTACTTTGCTCCCATGAATCTCAGTTTGAGAGGCCAAGCATGGAAGCCATTGTTCAAGAACTGGGGAATTGTAGTAGCTGTCTTTGA 2058 0.4373 MVCSVHLLPLLFLLLLLALLLNPTCVCGNDELRALMDLKSSLDPEGRFLSSWTMDGNPCGGYFEGVACNEKGQVANVSLQGKGLSGRLSPAIGGLKHLTGLYLHYNSLYGEIPREVANLTELSDLYLNVNHLSGEIPPEIGKMEKLQVLQLCYNQLTGSIPTQLVDLKKLSVLALQSNQLAGAIPATLGDLEMLTRLDLSSNNLFGSIPTKLANLPSLQVLDVHNNTLSGNVPTALKRLENGFVYENNVGLCGVGFSSLKACTASNNVNLTRPEPYGAGVGSISRDIPETANVKLPCNTTHCQNPSKSKQATSITVAIVLVTIAVSAIGVLTFTVYRRRKQKLGSAFDTSEGRLSTDQAKTIYRKNGSPLVSLEYSNGWDPLADSRNFNGDKQDLFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSAVAIKSISKTSCKSDEAEFLKGLNILTSLRNEHLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGDGEVLEWSTRISIVKGIAKGIAYLHAHKSNKPALVHQNISAEKVLLDRRYNPMLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQIITGKQKITSAMRLAAESFTFQEFIDPNLRGKFFEYEAAKLAKMALLCSHESQFERPSMEAIVQELGNCSSCL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01196 685 Pfam Leucine rich repeat 145 204 IPR001611 GO:0005515
Vian8g01196 685 SUPERFAMILY Protein kinase-like (PK-like) 392 678 IPR011009 -
Vian8g01196 685 Gene3D Transferase(Phosphotransferase) domain 1 492 684 - -
Vian8g01196 685 FunFam Protein NSP-INTERACTING KINASE 2 492 682 - -
Vian8g01196 685 FunFam Protein NSP-INTERACTING KINASE 2 141 263 - -
Vian8g01196 685 SUPERFAMILY L domain-like 25 240 - -
Vian8g01196 685 Pfam Protein tyrosine and serine/threonine kinase 417 678 IPR001245 GO:0004672|GO:0006468
Vian8g01196 685 Gene3D Ribonuclease Inhibitor 146 255 IPR032675 -
Vian8g01196 685 ProSiteProfiles Protein kinase domain profile. 413 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01196 685 Gene3D Phosphorylase Kinase; domain 1 384 491 - -
Vian8g01196 685 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 76 679 - -
Vian8g01196 685 FunFam Protein NSP-INTERACTING KINASE 2 384 491 - -
Vian8g01196 685 FunFam Leucine-rich repeat receptor-like kinase 30 139 - -
Vian8g01196 685 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Vian8g01196 685 Gene3D Ribonuclease Inhibitor 30 143 IPR032675 -
Vian8g01196 685 SMART LRR_typ_2 191 214 IPR003591 -
Vian8g01196 685 SMART LRR_typ_2 215 238 IPR003591 -
Vian8g01196 685 SMART LRR_typ_2 119 143 IPR003591 -
Vian8g01196 685 SMART LRR_typ_2 167 190 IPR003591 -
Vian8g01196 685 SMART LRR_typ_2 95 118 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01196 Vian-Chr8 30644398 30647624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01196 13 526 Miscellaneous Gene Families AT4G22730 56.926 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vian8g01196 PK_Tyr_Ser-Thr 2.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01196 - - vum:124819657 1310.05