Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01189 ATGGAGGAAAAAGAGATTTTTAGTTCTGGGCAGGCTGTTAAGGTTGTCGAGCCCCCCCAGAGCTTCCACGTGGCACTAAGATCCGTGCAGTTTTCTGGGCCCACGGGGGATTCGCCGGCACCGGTGAGTACTCCGGTGATTACTTCCGGTAGTACAGAAGGGAAGAAGAAGAGGGGCCGGCCTAGGAAATATGGACCGGACGGCAATGTGGCGCTGTCGCCGATGCCGATATCATCGTCGATTCCATTGACCGGAGACTTCTCAGTCTGGAAAAAGGGCAGAGGAAAGCCAGTTGAATCAATCAAGAAGTCTTTTAAGTTTTATGAAGTTGAAGGTCAAGGTGCAGGACAAGGTGATCAAATTGCATACTCAGTTGGTGCCAATTTCACACCTCACATCCTTATAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAAGGATGTCAAGCTATTTGCATTCTGTCTGCAAATGGCACTATTTCAAATGTTACACTACGCCAACCAACTTCTTCTGGTGGTACTTTAACATATGAGGGGCGCTTTGAAATTCTTTCCTTGACTGGTTCATATATGCCAACTGAGAATGGGTTTACAAAGAGCAGATCTGGTGGAATGAGCATCTCCTTGGCCGGTCCAGATGGTCGAGTAATGGGGGGTGGACTGGCCGGTTTGCTGGTAGCTGCCGGTCCTGTGCAGGTTGTTGTGGCTAGTTTTGTTCCTGGTCACCAGCTGGAACAGAAACCGAAAAAGCCTAGGGTGGAGCATGTTCCAATGACTGCACCTATACATGCCAGCCCTATACATGTGAGCCCTACTTCTGCAGATGATATAAGTATTGATCTTGGTGGAGTAAAGCCAATCTTGACACCAGCAGCTTTTCAAATGGACAGCATCTTTGGCAATGGACAACCTTCTGATGATGAGGCTCCTTTCCCTGAAGAAGAAGAAGAAGAAGAAGACCCTAACACGAGCTATGCAGATGCTGAAGTTGCTAGCTAA 1017 0.4779 MEEKEIFSSGQAVKVVEPPQSFHVALRSVQFSGPTGDSPAPVSTPVITSGSTEGKKKRGRPRKYGPDGNVALSPMPISSSIPLTGDFSVWKKGRGKPVESIKKSFKFYEVEGQGAGQGDQIAYSVGANFTPHILIVNAGEDVTMKIMSFSQQGCQAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLTGSYMPTENGFTKSRSGGMSISLAGPDGRVMGGGLAGLLVAAGPVQVVVASFVPGHQLEQKPKKPRVEHVPMTAPIHASPIHVSPTSADDISIDLGGVKPILTPAAFQMDSIFGNGQPSDDEAPFPEEEEEEEDPNTSYADAEVAS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01189 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 245 IPR005175 -
Vian8g01189 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 252 - -
Vian8g01189 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 281 IPR039605 GO:0003680
Vian8g01189 338 ProSiteProfiles PPC domain profile profile. 126 268 IPR005175 -
Vian8g01189 338 MobiDBLite consensus disorder prediction 302 338 - -
Vian8g01189 338 MobiDBLite consensus disorder prediction 27 51 - -
Vian8g01189 338 Gene3D - 131 261 - -
Vian8g01189 338 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Vian8g01189 338 CDD DUF296 130 244 IPR005175 -
Vian8g01189 338 MobiDBLite consensus disorder prediction 314 330 - -
Vian8g01189 338 MobiDBLite consensus disorder prediction 27 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01189 Vian-Chr8 30521729 30526983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01189 38 252 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 63.677 3.37e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01189 - - gmx:102667678 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01189 8 30521729 30526983 Vian3g01171 3 12990650 12996749 ECH
Vian8g01189 8 30521729 30526983 Vian8g01189 8 30521729 30526983 ECH
Vian8g01189 8 30521729 30526983 Vian3g01171 3 12990650 12996749 PCT