Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01181 ATGAAGAACTTCTCCCGGTTTTCAGCTGACAGCTTCATTGGAAATCCATTTTTATGCGGAAATTGGTTAGGATCCATATGTGATCCTTACATACCAAAATCCAGAGTGGTTTTCTCCAGGGCTGCAGTTGTTTGTCTCATAGTTGGTACCATCATATTATTGGCGATGGTAACTGTTGCTCTCTACAGATCAAGCCAATCCATGGAATTGATTAAAGGATCCAGGAGAACTGAACAAGGGCCACCCAAACTTGTAATTCTTCATATGGGCTTGGCCATCCACACCTTTGATGATATCATGAGAGTTACTGAGAATCTAAGTGAGAAGTATATTGTAGGATATGGTGCCTCAGGTACCGTCTACAAGTGTGTTTTGAAGAATTCTCGGCCAATAGCAATTAAACGACTATACAACCAGCATCAACACAACTCAAGGGAGTTTGAGACAGAACTTGAAACTATTGGCAGCATCAGACACAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTCTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTACATGGTCCCTTGAAAAAGGTAAAACTTGATTGGGAAGCACGCTTGAGGATTGCTGTGGGAGCTTCAGAAGGACTTGCTTACCTCCATCACGACTGCAATCCTAGAATTATTCACAGGGACATTAAGTCCTCAAATATCCTGATAGATGAGAACTTTGAAGCTCGTCTCTCTGATTTTGGCATTGCCAAATGTTTGTCAACTACAAGAACACATGCATCAACATCTGTGGTTGGGACAATAGGCTATATTGACCCTGAGTATGCCAGGAGTTCTAGGTTAAATGAAAAATCTGACGTGTATAGCTTTGGTATTGTTCTACTTGAGCTACTCACAGGGAAGAAAGCAGTGGACAATGATTCCAACTTGCATCACTTGATATTATCTAAGGCAGATAACAACACTATAATGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACAAAAGGAAACCCTTCTGAGAGGCCAACTATGCATGAGGTTGCCAGGGTTTTGGCATCACTACTCCCAGCACCTCCCAGCAACATCTTTGCTCCTCCTTCAAAGACCATTGATTATGCACAATTTGTGATTCAAAAGGGAAACAACCTCCATCCCCCACAGATGGAAAGGTTACAATCTCAGAAGTGCTCTAATGATCAATGGTTTGTTCGCTTTGAGAATGTTGTATCAAATAACAGCCTATAG 1308 0.419 MKNFSRFSADSFIGNPFLCGNWLGSICDPYIPKSRVVFSRAAVVCLIVGTIILLAMVTVALYRSSQSMELIKGSRRTEQGPPKLVILHMGLAIHTFDDIMRVTENLSEKYIVGYGASGTVYKCVLKNSRPIAIKRLYNQHQHNSREFETELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMENGSLWDLLHGPLKKVKLDWEARLRIAVGASEGLAYLHHDCNPRIIHRDIKSSNILIDENFEARLSDFGIAKCLSTTRTHASTSVVGTIGYIDPEYARSSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHHLILSKADNNTIMETVDPEVSITCMDLTHVKKTFQLALLCTKGNPSERPTMHEVARVLASLLPAPPSNIFAPPSKTIDYAQFVIQKGNNLHPPQMERLQSQKCSNDQWFVRFENVVSNNSL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01181 435 Gene3D Transferase(Phosphotransferase) domain 1 182 380 - -
Vian8g01181 435 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 373 - -
Vian8g01181 435 Gene3D Phosphorylase Kinase; domain 1 69 181 - -
Vian8g01181 435 Pfam Protein kinase domain 109 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01181 435 SUPERFAMILY Protein kinase-like (PK-like) 83 372 IPR011009 -
Vian8g01181 435 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 77 181 - -
Vian8g01181 435 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
Vian8g01181 435 SMART serkin_6 106 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01181 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vian8g01181 435 ProSiteProfiles Protein kinase domain profile. 106 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01181 435 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 182 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01181 Vian-Chr8 30403278 30405119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01181 1 435 Receptor kinase-like Gene Family AT5G62230 69.425 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vian8g01181 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01181 K20718 - gmx:100305433 788.875