Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01174 ATGATCAAGTTTGTTCTTTTCTTGTTATGCTTTGCCTCTGCAGTGAGCCTATCAGTTTCAGAGTCGGAAGCTGTTTCTGTGAAACTTCATGCAGCTGAATCCTTTTCTGTTGGGTATATTCAGATGAAAACTGCATCGAACTGCTCTTACTTGGTGCTTATAAGCACGAGTTGTTCATCGCCCAAGTTCACAACGGATAAGATCAGTATTGCGTTTGGAGATGGGAAAGGAAACCAGGTGTATGTACCAAGACTAGATGATCCACTTGCAAAGACATTTGAACAATGTTCTTCGGACTCATTTCAAATAGATGGTGCATGTGCATCTCCCATCTGCTTTGTGTATCTCTATAGATCAGGTGCAGAGCAAGGTTGGAAGCCTGAGAGTGTGAAAATCTTTGGCTATGACTCAGAGCCTGTTACTTTTACTTTCGACACCTCCATTCCCAATGACACATGGTATGGCTACAATCTGTGCCAAACTCCTTCTCCTCCTTCTTCTTCATTCCAACAATCACCTCAGAAATGGCACATGAGTTTGCTTCTAGGCTTTTTTCTTAGCCTTCTGCTTTAA 573 0.4223 MIKFVLFLLCFASAVSLSVSESEAVSVKLHAAESFSVGYIQMKTASNCSYLVLISTSCSSPKFTTDKISIAFGDGKGNQVYVPRLDDPLAKTFEQCSSDSFQIDGACASPICFVYLYRSGAEQGWKPESVKIFGYDSEPVTFTFDTSIPNDTWYGYNLCQTPSPPSSSFQQSPQKWHMSLLLGFFLSLLL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01174 190 Gene3D PLAT/LH2 domain 30 154 - -
Vian8g01174 190 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 45 156 IPR036392 GO:0005515
Vian8g01174 190 CDD PLAT 48 159 - -
Vian8g01174 190 PANTHER PLAT DOMAIN-CONTAINING PROTEIN 4 169 - -
Vian8g01174 190 Pfam Embryo-specific protein 3, (ATS3) 41 159 IPR010417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01174 Vian-Chr8 30291685 30293110 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01174 - - gmx:100305526 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00532 3 5230549 5233766 Vian8g01174 8 30291685 30293110 PCT