LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian8g01172	ATGACTCCAAAAATTTCAGATTTTGGCATTGCTAAAATTATTGAAATAAGTCAAGACCAAGAAAGCACAGATTTAATTGTTGGAACATGTGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTAATGGTTTTAGAGATTATTACGGGAAGAAAAAATATATATCCTCCTGAACCACATCATATAGCTGACGGCCTCCTAAGTTATGTTTGGAAACAATGGAGGGCTCAAACACCATTAAGAACCTTGAACTCAAATATTAGAGAAAACTATGCAGAAATTGAAGTTATAAAGTGTATTCAGATTGGTCTATTATGTGTTCAAGAAAGTCCTGATGTTAGACCAACAATGGTAACAATTGTTTCATATCTTGATGGTCATTTTAGTGAATTGCCAACTCCACAAAGACCAGCATTTTTCTTGCACGAAAGAATGGATTCCAAATCTATTGGGAGGAAATCTAGTTCTAGAAGATTTATGAATATTTCTAAGCCATTATCAATCAATGAAATGTCTACAAGTGAATGTTTTCCTCGTTAA	576	0.3281	MTPKISDFGIAKIIEISQDQESTDLIVGTCGYMSPEYAMFGQFSEKSDVFSFGVMVLEIITGRKNIYPPEPHHIADGLLSYVWKQWRAQTPLRTLNSNIRENYAEIEVIKCIQIGLLCVQESPDVRPTMVTIVSYLDGHFSELPTPQRPAFFLHERMDSKSIGRKSSSRRFMNISKPLSINEMSTSECFPR	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian8g01172	191	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	1	186	-	-
	Vian8g01172	191	SUPERFAMILY	Protein kinase-like (PK-like)	2	159	IPR011009	-
	Vian8g01172	191	Gene3D	Transferase(Phosphotransferase) domain 1	1	145	-	-
	Vian8g01172	191	ProSiteProfiles	Protein kinase domain profile.	1	140	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian8g01172	191	Pfam	Protein tyrosine and serine/threonine kinase	4	136	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian8g01172	Vian-Chr8	30279751	30280503	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian8g01172	1	191	Receptor kinase-like Gene Family	AT4G23150	47.644	1.22e-49	168

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vian8g01172		PK_Tyr_Ser-Thr	4.7e-15	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian8g01172	-		-	gmx:100808174	261.536