Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01166 ATGCCATCCCGACAACTCTCCACCTCATCAGACACACCGCCACATCATCATCACCACCACTTTTTCATACCTCTCCTCGCCGTCACCCTCTCAGCCTTCTCCCTCCTCCTTCTCTTCCTCTTCCTCTGCCTCCACCGTACCCTCACCCGCAAACGCGCCGCCCACCCTCCTCCTCCTCCTCCTTCCTCTTCCCCCCCGCACCGCCTCTCCTTCTCCGTCCTCCGCCGCGCCACCAATTCCTTCTCCTCCCGCCTCGGCCACGGCGGCTTTGGTCCCGTATTCGCCGGCACCCTCGCCGGTGTCCCCGTCGCCGTCAAGCTCATGGACTCTGCCTCCTCCCACCAGGGAGAGCGGGAGTTCCACAACGAGCTCTTTTTCGCATCCAAGCTCCTCTCTCCCCACGTCATCACCGCCACGCACTTCTCCTCTGACCCCAAACGACGCCGCTTCCTCTTGGTCTACGAGCTCATGCAAAACGGTAACCTCCAAGACGCGCTTTTGCACCGCAAGTGCCCCGAACTCTCGAACTGGAACACCCGCTTCTCAATCATTCTCAACATAGCAAAAGGAATTCACTTTCTCCACTCCTGTGACCCCCCTGTTATCCACGGCGACATAAAGCCGAGTAACGTTTTGCTTGATAGGGATTTCTCTCCCAGAATTGGCGACTTCGGGTTAGCGAGGCTGAGCTCGGAGCCTCCGAGGTTTGAAATTGAGGTGCTGGAGTGTGGTAGTGTTAATAATGATGAAGAGAAGCGGAGGGTGAAGGAGGAGGAGGTTGAGGATTGCGGGTCGGTGGCGAGTACTCACAGTGTTTTTATGGAAGAAAGTAGCTTGGGGGTGGAGCAATCTCCTTCGCCAGAGACTGCGGCGATGATGGCGATGACTTCGCCAGAGACGGGTTTGGCGGTGGCAGGGGCGTCGCCGGGGTTTGAGAAGGAGGATGCGAAGAAGATGAACGGGAAAGGGTTGAAGAGTAATTCGGTGAGGGATTGGTGGTGGAAGCATGAGAATGACGTTGGGAGTGGGGAGAGTAAGAAGGTTAAGGATTATGTGATGGAGTGGATTGGAAGGGATGTGAATAAGGAGAGGGTGAAGGGTGGAATTGACTGTGGGGATGTGGAGATGGGAAAGGAGGAGGCCAAGAAGAAGAAGAAGAAGAAGAGAAGGGTGAAGGAAATGGAATGGTGGGAGTCAATGGAAGAGGAGAACTTTGACGGGGTTGTGAAGGGGAAGAGAAAGACCGTGAGGGATTGGTGGAAAGATGAGTGTTTTGAGGAGAACGAAAATAAGGATAAGAAGAAGAAGAAGAAGAGGAAGGGTGGGGGTGTAAAGAATGATAATATTGAGAATGGTGATGATTGGTGGGTGAGTGATGATGCATTGGATAAGAGGAAGGGAAAGAGTAGGAGCAGAAACAACCGTGGGAACATGGATTGGTGGATGGATGGATTGAGTGGTGAGTTATGGAGAGGAAGGAGGAATAACAGCTTTGATTCTGCAAGTGGGGAGATTCCAAAGAGTGGTGGTGTTAGCAGTACTCCTAGTATGAGGGGAACTGTGTGTTATGTGGCTCCTGAGTGTGGCTATGGTGGGGATGTGACAGAGAAGTCTGATGTGTATAGTTTTGGGGTATTGTTGCTTGTCATAATTTCTGGGCGGCGACCACTTCAAGTGAGTGGTTCGCCTTTGTCTGAGTTTCAGAGAGCGAATCTACTTTCCTGGGCACGCCATTGTGCACGAAATGGGAAGCTTTTAGAGTTGGTTGATGAGTCTCTGCAGTTGTTGGATAAAGAGCAGGCTCTTCTCTGCATCAAGGTGGCTTTGCTTTGTCTGCAGAAGTCACCTATTCGTCGTCCTTCATTGAAGGAGGTTGTGGGAATGCTCAGTGGGGTGTTGGAACCACCCCAATTGCCTGTTGAGTACTCTCCTTCAACCCCTTCTCGCTACCCTTTCAAGTCTAGGAGAAAAGGAAGGTAA 1980 0.5247 MPSRQLSTSSDTPPHHHHHHFFIPLLAVTLSAFSLLLLFLFLCLHRTLTRKRAAHPPPPPPSSSPPHRLSFSVLRRATNSFSSRLGHGGFGPVFAGTLAGVPVAVKLMDSASSHQGEREFHNELFFASKLLSPHVITATHFSSDPKRRRFLLVYELMQNGNLQDALLHRKCPELSNWNTRFSIILNIAKGIHFLHSCDPPVIHGDIKPSNVLLDRDFSPRIGDFGLARLSSEPPRFEIEVLECGSVNNDEEKRRVKEEEVEDCGSVASTHSVFMEESSLGVEQSPSPETAAMMAMTSPETGLAVAGASPGFEKEDAKKMNGKGLKSNSVRDWWWKHENDVGSGESKKVKDYVMEWIGRDVNKERVKGGIDCGDVEMGKEEAKKKKKKKRRVKEMEWWESMEEENFDGVVKGKRKTVRDWWKDECFEENENKDKKKKKKRKGGGVKNDNIENGDDWWVSDDALDKRKGKSRSRNNRGNMDWWMDGLSGELWRGRRNNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPECGYGGDVTEKSDVYSFGVLLLVIISGRRPLQVSGSPLSEFQRANLLSWARHCARNGKLLELVDESLQLLDKEQALLCIKVALLCLQKSPIRRPSLKEVVGMLSGVLEPPQLPVEYSPSTPSRYPFKSRRKGR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01166 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vian8g01166 659 PANTHER OS07G0586332 PROTEIN 1 658 IPR044576 -
Vian8g01166 659 SMART serkin_6 79 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01166 659 ProSiteProfiles Protein kinase domain profile. 79 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01166 659 Gene3D Transferase(Phosphotransferase) domain 1 496 638 - -
Vian8g01166 659 MobiDBLite consensus disorder prediction 430 450 - -
Vian8g01166 659 Pfam Protein kinase domain 83 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01166 659 Gene3D Transferase(Phosphotransferase) domain 1 65 246 - -
Vian8g01166 659 MobiDBLite consensus disorder prediction 637 659 - -
Vian8g01166 659 Pfam Protein tyrosine and serine/threonine kinase 515 628 IPR001245 GO:0004672|GO:0006468
Vian8g01166 659 SUPERFAMILY Protein kinase-like (PK-like) 57 649 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01166 Vian-Chr8 30177357 30179336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01166 507 629 Receptor kinase-like Gene Family AT3G58690 34.884 1.87e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vian8g01166 Pkinase 4.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01166 - - gsj:114390604 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01166 8 30177357 30179336 Vian3g00574 3 5721099 5722772 PCT