Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01165 ATGTTTCCTTTCCAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGTCCCCACCACCACCAGCAACACGAAATCTCCCAAGATCTGATTCTGGATGATTATGCTTCACTGGATGATAATCTTTCTGGGAAAAACTTCTCCAGAGCCCAATCAGAGAATCTCTTCTATGAGCCAAATAAAAAGAATCATGACTCTAACGAACATATGAAGAAGATGATTCACAAGGAGATCGAAAGGCAAAGGAGACAAGAAATGGCTACCTGCTATGCCTCTCTCAGATCCCTTCTCCCTCTTCAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGTTGCCAAGAGAGATGAACTGAAGAAACTTTCCAGCCACAGCAATATGGAAAATAGCCATGAGGGTTTGCATACATCTTGCAACTTTACTGTCCATGAGAGTAATGATGTCATAGGAATCGAAATCACCAGTGGCTTCATTGAGGAAAGGCCTAAAGTTTCAAAGTTACTGCAGCTACTGATTCAAGAAGGTCTTGAAGTTGTTAGTTGCCTTTCATCCGAAGTCAATGGTAGATTGCTCCACAGTGTGCAGTGTGAGGTAAACAGTTCCAACTGTTTAGATCTATCTGAGCTGAGAAGGAAAATTTCCAAAGCATTTCCAGCATTTAGATGTTCTGACTAA 729 0.4129 MFPFQRGNELVIQFSNSPHHHQQHEISQDLILDDYASLDDNLSGKNFSRAQSENLFYEPNKKNHDSNEHMKKMIHKEIERQRRQEMATCYASLRSLLPLQFIKGKRSISDHMNEAVNYIKHMQNNIKELVAKRDELKKLSSHSNMENSHEGLHTSCNFTVHESNDVIGIEITSGFIEERPKVSKLLQLLIQEGLEVVSCLSSEVNGRLLHSVQCEVNSSNCLDLSELRRKISKAFPAFRCSD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01165 242 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 233 - -
Vian8g01165 242 SMART finulus 76 128 IPR011598 GO:0046983
Vian8g01165 242 CDD bHLH_AtORG2_like 71 147 - -
Vian8g01165 242 Pfam Helix-loop-helix DNA-binding domain 71 123 IPR011598 GO:0046983
Vian8g01165 242 Coils Coil 112 139 - -
Vian8g01165 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 142 IPR036638 GO:0046983
Vian8g01165 242 FunFam Transcription factor bHLH126 62 150 - -
Vian8g01165 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 122 IPR011598 GO:0046983
Vian8g01165 242 Gene3D - 61 156 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01165 Vian-Chr8 30166786 30167905 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01165 65 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 44.000 2.31e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian8g01165 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01165 - - gmx:100796473 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01165 8 30166786 30167905 Vian8g01165 8 30166786 30167905 ECH