Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01163 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCAACAACCTCAGATCGCTTCTGCCTTTAGAGTATATTAAGGGAAAGCGTTCAACCTCAGATCATGTGCATGAGGCTATGAATTACATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGAAAAGAGGGATGCGTTGTTGAAGGTGTCTAATAATTTGAGTAGCATTGAGAATGAAAGCTCTTCTGCCACTCATCTTCCACCTTTGGTTCTTGTTCATCCTTTCCCTGGGGGCCTTGAGATTATTTGCAGTCATAGCTTCAGGAAAAGTGCGTTTCCCATGTCAAGATTATTGGACATTCTGCATAAAGAAGGACTTAACGTGGTCAACACTACTTCCATCAGAAGAGATGGTAGATTCATACATACCATACAATCAGAGGATCCCAATCATTCTAATATGATTGACACTGATTACTCTGAACTGCAAATAAAGATTACGGAGGCATTATCATCTTCAAGTTTGCAAGAGACTTTGCCTGAACCTGAAAATTGCTAA 570 0.3982 MDENKKWMHKETERQRRQEMGKLCNNLRSLLPLEYIKGKRSTSDHVHEAMNYINHLQDKVKQLQEKRDALLKVSNNLSSIENESSSATHLPPLVLVHPFPGGLEIICSHSFRKSAFPMSRLLDILHKEGLNVVNTTSIRRDGRFIHTIQSEDPNHSNMIDTDYSELQIKITEALSSSSLQETLPEPENC 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01163 189 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 167 - -
Vian8g01163 189 Gene3D - 1 86 IPR036638 GO:0046983
Vian8g01163 189 FunFam Transcription factor bHLH126 1 84 - -
Vian8g01163 189 SMART finulus 10 62 IPR011598 GO:0046983
Vian8g01163 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Vian8g01163 189 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Vian8g01163 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 73 IPR036638 GO:0046983
Vian8g01163 189 Coils Coil 46 83 - -
Vian8g01163 189 CDD bHLH_AtORG2_like 5 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01163 Vian-Chr8 30141493 30142434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01163 5 160 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.857 1.56e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian8g01163 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01163 - - pvu:PHAVU_004G124200g 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01163 8 30141493 30142434 Vian8g01163 8 30141493 30142434 ECH