Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01156 ATGGGAAGAGGAAGGGTTGTTCTTGAGAGAATAGAGAACAAGATCAACCGTCAAGTAACGTTCTCAAAGCGCAGAAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTCTGTGATGCAGAAGTTGCCCTTATCGTCTTTTCTAGCCGTGGGAAGCTTTTTCAGTATAGCAGCACTGATATTAATAAAATCGTTGAGAGGTATCGCCAATGTCGTTACAGCAAGTTACAGACGGGTGATTCATCGGAACTCGAATCACAGAGTTCATATCATGAATTCTTGAAATTAAGAGCGAAATACGAATCTCTTGAGCGGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCTCTTAGCTTTAAAGAATTGCAGAGCCTTGAGAAACAACTAGATATTACACTTGCTCTAACTCGACAGCAGCAAACAAAGAAGCTCATGGCACGAGCTGATGAATTACGCGAAAAGGTGCGCAAAATGGAAGATCTTAACAAACAATTGGAATCTAAGGAAAAAGATGAATTCTCAAACCTCATTCTTGAGAGTAACAATTTTTTTCAACTGCATGCTACACAAGCCGATCAATTTGAATCTGGAACAACACTAAACACATGTAGGTTTCAACAGCAAGAAGTTGGTTCGAAAGAAAGAGCAATTGATACAAGGACAGAGGGTAACCATAGCACTCACACCAAAAGCAATGGATGGTTGTAG 714 0.409 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSSRGKLFQYSSTDINKIVERYRQCRYSKLQTGDSSELESQSSYHEFLKLRAKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALTRQQQTKKLMARADELREKVRKMEDLNKQLESKEKDEFSNLILESNNFFQLHATQADQFESGTTLNTCRFQQQEVGSKERAIDTRTEGNHSTHTKSNGWL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01156 237 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vian8g01156 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian8g01156 237 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vian8g01156 237 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian8g01156 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vian8g01156 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian8g01156 237 MobiDBLite consensus disorder prediction 213 227 - -
Vian8g01156 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian8g01156 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian8g01156 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian8g01156 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian8g01156 237 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vian8g01156 237 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian8g01156 237 MobiDBLite consensus disorder prediction 213 237 - -
Vian8g01156 237 Coils Coil 143 173 - -
Vian8g01156 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian8g01156 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01156 Vian-Chr8 30018224 30024927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01156 1 170 MADS-box Gene Family AT2G45650 56.471 4.67e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian8g01156 K-box 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01156 K09264 - gmx:100793681 406.371