Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01146 ATGGACGTGGATGGGGGCACCAAGCGTGTGTACAACCGTCTCGGCGGGGACGGGAAGCACCAGAAAGTGTGTTTCCACTGGCAAGCGGGCAAGTGCAATCGCTACCCGTGCCCTTTTCTGCACAGCGAATTGCCCGCATCTTCCCACTCCAACGGGGCCTCCTCGAAGCGTGCGTACGACAATTCGGGCTTATCGGGATTCTCGGGCCAGCGCGGACGCCCCAATTTCAACAACACGTGGGGCCGTGGAGGGGGGCGCGGAGGCGGCGGCGGTAGAGGGGTGGTGGTCAAGGCGGAAAAAGTTTGCAATTATTGGATTCAGGGGAATTGTAGTTATGGAGAGAGGTGTAAATTCCTTCACTCTTGGAAAGTGGGAGACGGCTTTTCTTTGCTGACACAGCTCGAAGGGCATCAGAAGTTGATGGTATGGGTCTTGGTTTTGTTGAATGAACAGGCTGTGAGCGCAATCGCTTTTCCCTCTGGTTCAGATAAGCTGTATACTGGAAGCACTGACGAGACGGCAAGGATTTGGGACTGCCAGTCTGGAAAGGTGGTTCCTTTTGAGGTTGTTGAAGAGTGTGTAGGTGTGATCAATCTTGGTGGTGAAGTTGGTTGCATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTCTGTCAAGGCCTGGAACACTCAAAATTTAATGGAGCTAAGTCTAAGTGGCCCAGTCGGACAAGTTTATGCTCTTGTTGTAAACAATGATATGCTCTTTGCTGGTACACAGGTATGGAACCTTGAAACCTTGCAATGTATACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGAACAATTCCTTTTATCTTGTTCCTTGGACAAAACTGTGAAGGTATGGTATGCTACAGAAAGCGGAAACTTGGAAGTGACATATACTCACAATGAGGAACATGGCATACTTACCCTATGTGGGATGCATGACTCACAAGGCAAGCCCATTTTGTTGTGTGCTTGCAATGATAACACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGGGGTAAGATATTAACTAAACAAGAGGTACGAGCGATGCAGATAGGGCCTAACGGCATATTCTTCACCGGAGACGGTACTGGTGAAGTAAGAGTGTGGAATTGGTCAGCGGAGACAACCGCTACCGTCCAATAA 1191 0.4962 MDVDGGTKRVYNRLGGDGKHQKVCFHWQAGKCNRYPCPFLHSELPASSHSNGASSKRAYDNSGLSGFSGQRGRPNFNNTWGRGGGRGGGGGRGVVVKAEKVCNYWIQGNCSYGERCKFLHSWKVGDGFSLLTQLEGHQKLMVWVLVLLNEQAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKVVPFEVVEECVGVINLGGEVGCMISEGPWVFVGIPNSVKAWNTQNLMELSLSGPVGQVYALVVNNDMLFAGTQVWNLETLQCIQTLTEHTSVVMSVLCWEQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILTLCGMHDSQGKPILLCACNDNTVRLYDLPSFAERGKILTKQEVRAMQIGPNGIFFTGDGTGEVRVWNWSAETTATVQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01146 396 Gene3D - 129 198 IPR015943 GO:0005515
Vian8g01146 396 SUPERFAMILY CCCH zinc finger 98 121 IPR036855 GO:0046872
Vian8g01146 396 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Vian8g01146 396 PANTHER - 256 392 IPR044715 -
Vian8g01146 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Vian8g01146 396 SMART WD40_4 349 386 IPR001680 GO:0005515
Vian8g01146 396 SMART WD40_4 303 346 IPR001680 GO:0005515
Vian8g01146 396 SMART WD40_4 127 178 IPR001680 GO:0005515
Vian8g01146 396 SMART WD40_4 262 299 IPR001680 GO:0005515
Vian8g01146 396 ProSiteProfiles Zinc finger C3H1-type profile. 97 123 IPR000571 GO:0046872
Vian8g01146 396 Gene3D - 17 126 - -
Vian8g01146 396 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Vian8g01146 396 SMART c3hfinal6 98 122 IPR000571 GO:0046872
Vian8g01146 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 178 - -
Vian8g01146 396 Pfam Zinc finger domain 102 120 - -
Vian8g01146 396 MobiDBLite consensus disorder prediction 64 89 - -
Vian8g01146 396 Gene3D - 209 396 IPR015943 GO:0005515
Vian8g01146 396 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Vian8g01146 396 Pfam WD domain, G-beta repeat 131 178 IPR001680 GO:0005515
Vian8g01146 396 SUPERFAMILY WD40 repeat-like 148 388 IPR036322 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian8g01146 WD40 0.024 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01146 - - gmx:100775542 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01146 8 29833394 29840257 Vian8g01146 8 29833394 29840257 ECH