Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01138 ATGGCGACAGCGGCGGAGCTAGAAACGAAGACCTACTGGTGCCACGAATGCGATATGTGTGTGTCCCTCACGCTCCTTCCCTCGCCTCTCCTCTGTCTCCACTGCCACACCTCCTTCCTCGAACTAATGGCCTCTCCCTTCTCCCAAAACAATGTCGAATCACACCTCTTTAGCGTCGTTTTCCACGACGCGCTCTTACTCCTCTCCCCCAAGCCCCTCCCCGCCAAACCCTACCCTCTTCCCTCCGTCAACGTCACACCCTCGCTCCTTCCCGCACTCGACCCCAATGGCATTGTTTTCTGCGCTGTGTGCAAAGACCAAATTTCCCTCTTTGATGCTGAGGCCAAACAGTTGCCCTGCAAACACCTCTACCATGCCGGTTGCATCACGCCGTGGCTCGACCTCCACGCGTCGTGCCCGTTGTGCAGGCTCTGCCTTGAGGAAGAGGCGGCACAGGAGGAGGAAGACGAAGGTAACGGCGTGGTGAGGGAGATCCGGAGGGAGCCTCGAGACCAAATTTCCCTCTTTGACGCTGAGGCCAAACAGTTGCCCTGCAAACACCTCTACCATGCCGGTTGCATCACGCCGTGGCTCGACCTCCACGCGTCGTGCAGGCTCTGCCTTGAGGAAGAGGCGGCACAAGAGGAGGAAGACGAAGGTGACGACGTGGTGACGGAGATCCGGAGGGAGCCTCGAGGTGCCCAAGCGCCTTTGCTATAA 720 0.5889 MATAAELETKTYWCHECDMCVSLTLLPSPLLCLHCHTSFLELMASPFSQNNVESHLFSVVFHDALLLLSPKPLPAKPYPLPSVNVTPSLLPALDPNGIVFCAVCKDQISLFDAEAKQLPCKHLYHAGCITPWLDLHASCPLCRLCLEEEAAQEEEDEGNGVVREIRREPRDQISLFDAEAKQLPCKHLYHAGCITPWLDLHASCRLCLEEEAAQEEEDEGDDVVTEIRREPRGAQAPLL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01138 239 SUPERFAMILY RING/U-box 99 146 - -
Vian8g01138 239 SUPERFAMILY RING/U-box 177 208 - -
Vian8g01138 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 230 IPR013083 -
Vian8g01138 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 166 IPR013083 -
Vian8g01138 239 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vian8g01138 239 Pfam Ring finger domain 101 143 IPR001841 -
Vian8g01138 239 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Vian8g01138 239 MobiDBLite consensus disorder prediction 213 239 - -
Vian8g01138 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 74 143 - -
Vian8g01138 239 SMART ring_2 101 142 IPR001841 -
Vian8g01138 239 SMART ring_2 171 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01138 Vian-Chr8 29654872 29655898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01138 180 207 C3H Transcription Factor Family AT3G60080 60.714 3.22e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01138 K11982 - gmx:100782164 189.504