Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01132 ATGACCTCCATGACACCTTCGCGGGTGACAGGAGGGTTAACCCAATCATCTTCACATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCACAGAGTTTAGTTAACACTCACTTAAGTTCATCTATTGTTAACTCATCTAGCACAGTTACGGGAACCCGTCGAACAAACCTGGGTCCGGTTTCTGGTGATATGAATAATGTAGGTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACTGATGCAAATTCTGCTCTCTCTGGTGGCCCCCATTTGCAGCGAAGTGCCAGTGTTAATACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACGTCAAACAATATTAGTATTTCGGGCTCATCAGTGATCGATGGTTCCTCTGTAGTACAGCAGAGCTCTCATCCAGATCATAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGCACTGCAAGTGCTACATCGTTGCCTGCGTCTCAAACTGGTCCGACTTCCGTTCATATGGGTGCGCATGTCCCTGGATCTTTCATTCATGATCCAAATAATGCATCTCAGCTGTCCAAAAGATCTAGGTTGGATATCAAGCAGGAAGATATAATGCAGCAGCAGCAGCAGAAGCAGGTCATGCAACAGATTCTTCAAAGACAAGATTCCATGCAATTGCAGGGTCGTAGTCCGCAGTTACAGGCTTTATTTCAACAACAGCAGAGACTTAGACAACAACAAATCTTTCAGTCAATGCCCCAATTACAGCGAGTGCACTTGCAGCAACAACAGCAACAACAACTTCAACAACAACAAATGCAATATAGGCAGCAATTACAGCAACAAGTGATGCAGCCCTCTTCTTCTGTCAAGCGCCCATGTGACAATGGTGTCAGTGGGGTTTGTGCTCGTCGACTGATGCAATATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCTTATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAGGAAACGTTGGTGTTTGTCGTTGTATAACAATGTTGGCCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTACGGATGCATGGCAATGTGACATATGTGGTTGTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGCTGGCGGTGTCATTGATGAACTGTTGTTTCTGGACTTGCCACGTGAAATAAGATTTTCTTCTGGTGCAATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGAGTTGTGCGTGAAGGTCAACTACGCATCATATTCAGTCAAGATTTGAAGATATTATCTTGGGAGTTCTGTGCAAGGCGGCATGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAGTTAGTACATGTAGCTCAAAAGTGCCAGAGTACAATTGCTGAAAGTGGGGCAGATGGGGTTTCTCAACAAGATTTGCAAACAAAAAGCAACGTGGTGTTGACAACAGGGCGCCAGCTTGCAAAGATGTTGGAGTTGCAATCGCTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATTGCGGAGGTTGTCAACAGCATGAAAGACCTAATAGATATCTGTGGCGAGCAAAACGTTGGGGCAATAGAGAGTTTGAAAAGTTATCCTCTACTAACAAATGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCAGCTGGCAAATGTTCATGGTCTGCCAACTGATAGAAACACGCTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCAGATAAACAACGGTCAAAATGTGGTTAATCGTAGTGCTTTGAGTGGGTCAGCCCATTCAGCACTTACAACCAACTACCAAAATCTTCTCATAAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCCTTCAGCGCGAAGGATCCTCATTCAATAATTCTAACCCAAGTTCCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTTTAGTTCCAGGCCCAATGCAAAACTCGCCTGTAGGTGGCTTCCCAGGTTCCCATCAAACCCTGCAGCCGCTGCCGCAACTCCTCCAACAGCGCACATTAAGCGCAAATGGTTTACTGCAACAAAATCATTCACCGGGGTCCCAAGGAAATCAAGCTCTACAGCAGCAGCAGATGATCCACCAACTAGTGAAGGAAGTGTCAAATAACAATGGGGGAATGCAATCACAGCCTCTTGGTGGACCCAATGCAAATGGGAATATGGCAAAGAATGCATTGGGTTTTGGGGGCAATACTCCATCCGTAAGCGGAGGTTCTGCCAATGTTCCACGAAACAATGGACCCATTTCGAGGAATAATAGCTTCAAAACAGCTTCAAACAGTGATTCTTCTGCCGCTGCTGGCAACAGTGGATTCAACCCAAGAACATCTGATATGCCGCAAAGTCTACATTTGCAAGATGTGGTTCAGGACATTGGCCATGAGTTCGCGGATAACCCCTTCTTTAACAGTGATCTTGATGATGAAATGGGTTTTGGCTGGAAGGCATGA 2604 0.447 MTSMTPSRVTGGLTQSSSHSGIFFQGDGQSQSLVNTHLSSSIVNSSSTVTGTRRTNLGPVSGDMNNVGLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVVQQSSHPDHNVQQLQQNQQQLQGTASATSLPASQTGPTSVHMGAHVPGSFIHDPNNASQLSKRSRLDIKQEDIMQQQQQKQVMQQILQRQDSMQLQGRSPQLQALFQQQQRLRQQQIFQSMPQLQRVHLQQQQQQQLQQQQMQYRQQLQQQVMQPSSSVKRPCDNGVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRARKRWCLSLYNNVGHHALGVFPQAATDAWQCDICGCKSGRGFEATYEVLPRLNEIKFAGGVIDELLFLDLPREIRFSSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFSQDLKILSWEFCARRHEELLPRRLVAPQVNQLVHVAQKCQSTIAESGADGVSQQDLQTKSNVVLTTGRQLAKMLELQSLNDLGFSKRYVRCLQIAEVVNSMKDLIDICGEQNVGAIESLKSYPLLTNASKLQMQKMQEMEQLANVHGLPTDRNTLNKLMAMNPGLNNQINNGQNVVNRSALSGSAHSALTTNYQNLLIRQNSMNSSPGSLQREGSSFNNSNPSSSSALQGAGPSLVPGPMQNSPVGGFPGSHQTLQPLPQLLQQRTLSANGLLQQNHSPGSQGNQALQQQQMIHQLVKEVSNNNGGMQSQPLGGPNANGNMAKNALGFGGNTPSVSGGSANVPRNNGPISRNNSFKTASNSDSSAAAGNSGFNPRTSDMPQSLHLQDVVQDIGHEFADNPFFNSDLDDEMGFGWKA 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01132 867 MobiDBLite consensus disorder prediction 653 682 - -
Vian8g01132 867 MobiDBLite consensus disorder prediction 776 832 - -
Vian8g01132 867 MobiDBLite consensus disorder prediction 753 768 - -
Vian8g01132 867 MobiDBLite consensus disorder prediction 753 832 - -
Vian8g01132 867 Pfam LIM-domain binding protein 311 571 IPR029005 -
Vian8g01132 867 Coils Coil 267 287 - -
Vian8g01132 867 PANTHER LIM DOMAIN-BINDING PROTEIN 49 853 IPR029005 -
Vian8g01132 867 MobiDBLite consensus disorder prediction 653 706 - -
Vian8g01132 867 MobiDBLite consensus disorder prediction 42 63 - -
Vian8g01132 867 MobiDBLite consensus disorder prediction 135 177 - -
Vian8g01132 867 MobiDBLite consensus disorder prediction 135 199 - -
Vian8g01132 867 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01132 Vian-Chr8 29550454 29555814 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01132 306 580 C2H2 Transcription Factor Family AT1G43850 59.273 4.31e-106 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01132 - - pvu:PHAVU_004G121400g 1366.67