Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01129 ATGCCCCCCATGACACCTTCGCGGGTGACGGGAGGGTTAACCCAATCATCATCATCACATTCTGGAGTTTTCTTTCAAAGAGATGGACTGTCACAGAGTGTAGTTAACTCTCACTTAAGCTCATCTTTTGTTAATTCATCAAGCACGGTTTCGGGAGCCGGTAACCTGGGTCTGGTTTCTGGGGATATGAATAATGCAGTTCTAAATAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCTCTCTCTGGTGGCCCCCATTTGCAGCGAAGTGCCAGTGTTAACACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACGTCAAATAATATTAGTATTTCGGGCTCATCAGTGATTGATGGTTCCTCTGTAGTACAGCAGAGCTCTCATCAAGATCAGAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTGCTTCAAGTGCGACATCGTTGCCTGCTTCTCAAACTGGTCCGTCTACCCTTCATATGGGTGCACATGTCCCTGGATCTTTCATTCATGATCCAAATAATGTATCTCAGCTGTCCAAAAAACCTAGACTGGATATCAAACAGGAAGATATAATGCAGCAGCAGCAGGTTATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTGCAGGGTCGTAATCCACAGTTACAGGCTTTGCTTCAACAACAGCAGAGACTGAGACAACAACAACTCTTTCAGTCAATGCCACAGTTACAGCGAGTGCAGTTGCAACAACAACAGCAGCAGCAGCAACAACAACAACAAATGCAATTGAGGCAGCAGTTACAGCAACAAGTGATGCAGCCCTCTTCTGCCGTCAAGCGTCCATACGATAATAGTGTTAGTGGGGTTTGTGCTCGTCGATTGATGCAGTATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCGTATTGGAGAAAATTTGTGGCTGAATACTACTCTCATCGTGCAAAGAAACGGTGGTGCTTGTCGTTATATAACAATGTTGGGCATCATGCACTTGGTGTTTTCCCGCCAGCAGCAATGGATGCGTGGCAGTGTGATATTTGTGGTTCTAAATCTGGAAGGGGGTTTGAGGCGACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTGATTGATGAACTTTTGTTTCTGGACTTGCCACGTGAAATAAGATTTCCTTCTGGTGCAATGATGTTAGAATATGCAAAAGCAGTCCAAGAGAGTGTATATGAGCAGCTTCGCGTTGTTCGTGAAGGCCAACTTCGCATCATATTCACTCAAGATTTGAAGATATTATCTTGGGAGTTCTGCGCAAGGCGGCATGAAGAACTTATTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAATTAGTTCAGGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGGCTGATGGGGTTTCTCAGCAAGATTTGCAAACAAACAGCAACATGGTATTGACAGCGGGGCGCCAGCTTGCTAAAATTTTGGAGTTGCAATCACTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATATCGGAGGTTGTCAACAGCATGAAAGACCTAATTGATATTTGTGAAGAGCACAAAATTGGGGCAATTGAGAGTTTAAAAAATTATCCTCGACTAGCAACAGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAACAGATGGCAAGTGTTCATGGTCTGCCTACTGATAGAAACACACTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCACATAAACAGCACTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTTAGTTCTTACCAACTACCAAAATCTTCTCATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCAATCCTGGATCCTCATTCAGTAATTCGAACCCAAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTTTAATTCCAGGCTCAATGCAAAACTCTGTAGGTGGTTTCCCAGGTCCCCATCTACCCCCACAGCAGCAGCAGCACCAGCAACAACTCCTTCAACAGCGTACGTTAAGTGGAAATGGTTTACTGCAACAAAGTCATTCCCAGGGGTCCCAAGGAAATCAAGCCCTACAGCAGCAGCAGATGATCCAGCAACTGATGCAGGAAATGTCAAATAACAATGGGGGAATGCAATCACAGTCTCTTGGTGGACCCAATGCAAATGGGAATCTGGCAAAAAATGCACTGGGTTTTGGGGGCCATGCTCCATCCTTAAGTGGAGGTTCTGTCAATGTTCCAGGAAACAATGGACCCATTTCAAGGAATAACAGCTTCAAAACAGCTTCCAACAGTGATTCTTCTGCAGCTGGTGGCAACCATGGATTCAACCCAAGAACATCTGATATGCCACAAAGTCTACATTTGCAAGGTATGGTTCAGGATATTGGCCATGAGTTCGCGGATAGCTCCTTCTTTAACAGTGATCTTGATGATAACATGGGTTTTGGATGGAAGGCATGA 2589 0.443 MPPMTPSRVTGGLTQSSSSHSGVFFQRDGLSQSVVNSHLSSSFVNSSSTVSGAGNLGLVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVVQQSSHQDQNVQQLQQNQQQLQGASSATSLPASQTGPSTLHMGAHVPGSFIHDPNNVSQLSKKPRLDIKQEDIMQQQQVIQQILQRQDSMQLQGRNPQLQALLQQQQRLRQQQLFQSMPQLQRVQLQQQQQQQQQQQQMQLRQQLQQQVMQPSSAVKRPYDNSVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSHRAKKRWCLSLYNNVGHHALGVFPPAAMDAWQCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPREIRFPSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELIPRRLVAPQVNQLVQVAQKCQSTIAESGADGVSQQDLQTNSNMVLTAGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICEEHKIGAIESLKNYPRLATASKLQMQKMQEMEQMASVHGLPTDRNTLNKLMAMNPGLNNHINSTHNMVNRGALSGSAHLVLTNYQNLLMRQNSMNSSPGSNPGSSFSNSNPSPSSALQGAGPSLIPGSMQNSVGGFPGPHLPPQQQQHQQQLLQQRTLSGNGLLQQSHSQGSQGNQALQQQQMIQQLMQEMSNNNGGMQSQSLGGPNANGNLAKNALGFGGHAPSLSGGSVNVPGNNGPISRNNSFKTASNSDSSAAGGNHGFNPRTSDMPQSLHLQGMVQDIGHEFADSSFFNSDLDDNMGFGWKA 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01129 862 Coils Coil 260 284 - -
Vian8g01129 862 MobiDBLite consensus disorder prediction 134 176 - -
Vian8g01129 862 MobiDBLite consensus disorder prediction 646 708 - -
Vian8g01129 862 MobiDBLite consensus disorder prediction 748 771 - -
Vian8g01129 862 MobiDBLite consensus disorder prediction 784 826 - -
Vian8g01129 862 Pfam LIM-domain binding protein 307 567 IPR029005 -
Vian8g01129 862 PANTHER LIM DOMAIN-BINDING PROTEIN 60 845 IPR029005 -
Vian8g01129 862 MobiDBLite consensus disorder prediction 646 685 - -
Vian8g01129 862 MobiDBLite consensus disorder prediction 748 764 - -
Vian8g01129 862 MobiDBLite consensus disorder prediction 783 826 - -
Vian8g01129 862 MobiDBLite consensus disorder prediction 134 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01129 Vian-Chr8 29530607 29536467 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01129 302 571 C2H2 Transcription Factor Family AT1G43850 60.741 1.83e-107 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01129 - - pvu:PHAVU_004G121400g 1193.72