Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01120 ATGGGTTTTCTCCGGCGACTCTTCGGCGCCAAGAAACACCACAATCCACCACCCTCCGACGGCTCAGTTCCTAAACCCGCCAAGGACAAGAAAACGTGGAGCTTCGTGAAGCAGAGTACGAGATACAAGTCCACCACGTTGCCCTCACTTAACAACTTTGACCCTTCTACTTCTTCTGCTCCTTTCTCCGACTCCTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCCACCGCCGCCGTCGCAGAGGCCGCTCTCGCCGCCGCCCATGCAGCTGCAGAGGTCGTGAGGCTGACCAGCGGCAATGGGCCTCCCGCCGGAAAACCCGCCACGGCGTCTCATCCCCGGCTGGCGGCTGAGAATATCGCCGCCGCCGTTAAGATTCAGTCGGCGTTCCGAGGTTACTTGGCCAAGCGCATGTATTTGATTTGGTTTTTCAATGTTGTGGCTGTTGACTGCCACCTGCGGGGTCCTTCAGAAAATGTTGCTGTGAGTCTAGAGAGGATCAAGGGACCAAGAAAGTTTCGAGAAATGGACAAATGGGTAATCTGTGGGAGTGAGAATATGAGTGAGCCCCACGTTTTGATGAGCCTTTGTACCCCAAAAATAACACCAAATGTGAAATGGCCATGCTTCAACCCATTTCCTAGGTCATGGACCTCCGTGCTGGAGGGTCACTGCCATGTTGCTAAGTTTCTGATTCTCAAGGCAAGGAGGGCTTTGAGAGCACTTAAGGCATTGGTGAAGTTGCAAGCATTGGTGAGAGGCCACATTGTGAGAAAGCAAACTACAGATATGCTAAGGCGCATGCAGACTTTGGTGCGACTGCAGTCTCGGGCACGTGCCACACGTGGGAACTTGTCTGATAATATGCATTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCTCAGAAGATTATCAGCACTCACTTTATGGCTATAGTACGAAATTTGATGGATCTGTTCTCAAGGTACATGTGGTTCTTTCTGCAAATACAAGTTTTTATGAGTGTTTAGATGGTGAACCTATTAATATGATCTCCCCTATCTTACAGAGATGTAGTTCTAACGCAAATTTTAGGGACGTTGACATGGAGAAAGCCCGGTTTGATTCCCATTGGCTAGACAATTGGATGGAAGAAAATTCTTGGAGCCAAACCAGAGATGGTTCATTGAAAACTGGGCATCTTGATGATGAAAAGAGTGACAAGATTCTTGAAGTGGATACTTGGAAGCCACACTTGAATAGTAGTGGCAGCTCATTTCAGGCAGCACATCATTATTTGTCTTCTGATTACAACAATGAGAATTTTGTGGCATATGAGTCTCCATCAAAACGTTCTTCAAAAACTCTATATCCAAGTCTCTCTTCAAGGGAGGTTCTACCCTTTGGCTCTCTGAAGCTTCACAGAGGAAAAGAAGAAGCATCTTTGAGAAATGTTGAAGATAGTCCTCAAGCATTCTCTGCTTCCTCCAGACGTGGAAGTGGTTCAAGGAGAGGTCCATTCACACCAACTAAGAGTGAGTGTGCATGGAGTGTCTTCAGTGGCTATTCTGGTCATCCCAATTACATGTCAAATACTGAATCTTCAAGAGCCAAGGTTAGGTCACATAGTGCTCCAAGGCAAAGAATTGAGTTTGAGAGATATGGTTCCACAAGAAGGTCTCTACAGGGTTTTTGGGATGCAGGACCTAGTTCTGATAGGGATTCTGATTTTAGAAGCAAGGGCTATCCTACCACAAACAGCAGCTTGAACAGAATTGGGAGTGCCAATTTAAGGTGA 1788 0.4743 MGFLRRLFGAKKHHNPPPSDGSVPKPAKDKKTWSFVKQSTRYKSTTLPSLNNFDPSTSSAPFSDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGNGPPAGKPATASHPRLAAENIAAAVKIQSAFRGYLAKRMYLIWFFNVVAVDCHLRGPSENVAVSLERIKGPRKFREMDKWVICGSENMSEPHVLMSLCTPKITPNVKWPCFNPFPRSWTSVLEGHCHVAKFLILKARRALRALKALVKLQALVRGHIVRKQTTDMLRRMQTLVRLQSRARATRGNLSDNMHSFKSSLSHYPVSEDYQHSLYGYSTKFDGSVLKVHVVLSANTSFYECLDGEPINMISPILQRCSSNANFRDVDMEKARFDSHWLDNWMEENSWSQTRDGSLKTGHLDDEKSDKILEVDTWKPHLNSSGSSFQAAHHYLSSDYNNENFVAYESPSKRSSKTLYPSLSSREVLPFGSLKLHRGKEEASLRNVEDSPQAFSASSRRGSGSRRGPFTPTKSECAWSVFSGYSGHPNYMSNTESSRAKVRSHSAPRQRIEFERYGSTRRSLQGFWDAGPSSDRDSDFRSKGYPTTNSSLNRIGSANLR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01120 595 MobiDBLite consensus disorder prediction 577 595 - -
Vian8g01120 595 PANTHER IQ-DOMAIN 5-RELATED 29 567 - -
Vian8g01120 595 MobiDBLite consensus disorder prediction 483 506 - -
Vian8g01120 595 MobiDBLite consensus disorder prediction 558 595 - -
Vian8g01120 595 Pfam Protein of unknown function (DUF4005) 485 557 IPR025064 -
Vian8g01120 595 SMART iq_5 121 143 IPR000048 GO:0005515
Vian8g01120 595 SMART iq_5 243 265 IPR000048 GO:0005515
Vian8g01120 595 ProSiteProfiles IQ motif profile. 246 273 IPR000048 GO:0005515
Vian8g01120 595 MobiDBLite consensus disorder prediction 474 506 - -
Vian8g01120 595 Pfam IQ calmodulin-binding motif 124 140 IPR000048 GO:0005515
Vian8g01120 595 Pfam IQ calmodulin-binding motif 246 263 IPR000048 GO:0005515
Vian8g01120 595 MobiDBLite consensus disorder prediction 1 34 - -
Vian8g01120 595 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01120 Vian-Chr8 29381134 29385288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01120 218 588 IQD Protein Family AT5G07240 35.567 2.14e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01120 - - vum:124834771 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01120 8 29381134 29385288 Vian8g01120 8 29381134 29385288 ECH
Vian8g01120 8 29381134 29385288 Vian3g00606 3 6111937 6116077 PCT