Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01113 ATGGCTCCGCCGCCTCCGGTGGAACATAACAACGCCGACTCCTCCACAATCGCCTCTGTCGCCGCAGACTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTTTCAACTTGTCGACGACCAATCCATCGATGATGTTATCTCCTGGAACGACGACGGATCAACGTTCATCGTGTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACTTACGGATTCAGGAAGGTTGTACCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGTCGAGGCGAGAAGCAGCTTCTGAGCGAAATTCAACGGCGGAAGATCTCGTTGCCGGTGACTTCGACGTCGCCGTCTACGACGGCTCCGGCGACGGTTTCTGTTCCGTCGTCGATGCCGTTGACTGCGATTCCGATCATATCGCCGTCGAACTCCGGCGAGGAGCAGGTGTTATCGTCGAACTCGTCACCGTCGCTCGCGCCGGCGGAGCTCGTCGACGAGAACGAGAGGCTTAGAAAAGAGAACGTTCAGTTGACGAAAGAGCTCGCGGAGATGAGATCCCTCTGCAATAACATCTATGCTCTCATGTCGAATTACGCGAACACCAACGGTAACACCAACGGTAACGGTAACGTAAGTTACCAAACGGACGGCGGTGCTGGTGGCGCGCAGGGAAGTAGGGAGTCAGGCATGACGGCGGTGAAGCCGCTGGATTTGATGCCGACGAACCGGATCTCCGGTGAGGAAGCGGCGGAGTTGAATCCGAAGCTGTTCGGTGTGGCGATTGGAGCGAAGCGCGCGAGGGAGGGAGGAGGAAGCGGTGGAGAAGAAGGAGGTGGAGCAAAGAAAGATACAGTGCTGCGTCTGCACCACCAGGGTCCTGGGGACGTGAAAGCTGAACCGTTGGATTGCCAAAACCACCGCGAGAATCAGGAAGCGCCGTGGTTGAGTCAGTGTCATATAGCAAATCAGAGGGTTTGTAATTGA 1029 0.551 MAPPPPVEHNNADSSTIASVAADSQRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKQLLSEIQRRKISLPVTSTSPSTTAPATVSVPSSMPLTAIPIISPSNSGEEQVLSSNSSPSLAPAELVDENERLRKENVQLTKELAEMRSLCNNIYALMSNYANTNGNTNGNGNVSYQTDGGAGGAQGSRESGMTAVKPLDLMPTNRISGEEAAELNPKLFGVAIGAKRAREGGGSGGEEGGGAKKDTVLRLHHQGPGDVKAEPLDCQNHRENQEAPWLSQCHIANQRVCN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01113 342 FunFam Heat stress transcription factor B-4 24 122 - -
Vian8g01113 342 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01113 342 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01113 342 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01113 342 Coils Coil 182 202 - -
Vian8g01113 342 Gene3D - 24 122 IPR036388 -
Vian8g01113 342 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01113 342 SUPERFAMILY "Winged helix" DNA-binding domain 29 121 IPR036390 -
Vian8g01113 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 215 IPR027725 -
Vian8g01113 342 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01113 342 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01113 Vian-Chr8 29252318 29253446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01113 22 342 HSF AT5G62020 47.493 9.32e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian8g01113 HSF_DNA-bind 3.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01113 K09419 - gmx:100812267 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01113 8 29252318 29253446 Vian8g01113 8 29252318 29253446 ECH
Vian8g01113 8 29252318 29253446 Vian3g00612 3 6189620 6190637 PCT