Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01098 ATGAACATCATAGTACTCTTCATTTTCCTACCATCATTGCTTTCTTCAGTTTCCTGCACCCCACGCGGTCAATCCTCTTCACCGGAAACGCTTAATGAGGCCGCCGTCAAAGCAACGCTTTTCATGTCACTCGTCATCTTCGTTTTCGCCCTTCTCATCACCGCATTCTGCTTCGTCTTCATCCGCTGCATATCCAACCGAAATCGCGCCCTTCCACAAGTCACGCGCGGACTCGACCCGCGCGTGCTCTCCACGTGCCCCGTCATGTCCTACTCCGCGTTGAAACTGAATCACCCCAAAGCGGTGCAAAACGCCCCGTTTCAATGCGCGGTGTGTCTGGCGGACTTCGCCGACGACGACACGCTCCGGCTGCTGCCGAAGTGCGGTCACGTGTTCCACACGCGCTGCATCGAGGAGTGGCTGGCTGCGCACGTGACGTGCCCCGTGTGCCGCAGCGACGTGAGCGCGGAAACAGGGGATGCATGTGTGCGGAACGTGCTGGAGGAGGAAGATTCTGTAAGAGATTTTGGTGTTCTTGTTAGGTCGCATTCTACGGGTCACTCTTTAGAGGGCTTTTCCATCAAAGTTCCCGAGGAAGCGAAGAAGAAGGTTCTAGAAGATGAGGAATGTGGAAATTCCACGAAGATGAATCGTTCTTCAAGTTACGACGTCGTTTTGGGGATTGAAGAAGGGGGTGTAGGTAGCACTACTACTACTGCTACTACAACTAGGACTAATGATAATAATAACAGTTGGATTTTGTGGACTTCTCAACCTATTGATTCTGGTGATTCGGAGATTCCGAAGTTTTGGGGTGCTTCAATGGTGAGAGAAGATAAAGAAAAAGGAAAAGTGAAAGAGTTTGATGGAAGAACATTTTTCGATTGTGAAGTTTGA 897 0.505 MNIIVLFIFLPSLLSSVSCTPRGQSSSPETLNEAAVKATLFMSLVIFVFALLITAFCFVFIRCISNRNRALPQVTRGLDPRVLSTCPVMSYSALKLNHPKAVQNAPFQCAVCLADFADDDTLRLLPKCGHVFHTRCIEEWLAAHVTCPVCRSDVSAETGDACVRNVLEEEDSVRDFGVLVRSHSTGHSLEGFSIKVPEEAKKKVLEDEECGNSTKMNRSSSYDVVLGIEEGGVGSTTTTATTTRTNDNNNSWILWTSQPIDSGDSEIPKFWGASMVREDKEKGKVKEFDGRTFFDCEV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01098 298 CDD RING-H2_EL5-like 108 151 - -
Vian8g01098 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 182 - -
Vian8g01098 298 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vian8g01098 298 SMART ring_2 109 150 IPR001841 -
Vian8g01098 298 Pfam Ring finger domain 108 151 IPR001841 -
Vian8g01098 298 FunFam E3 ubiquitin-protein ligase ATL6 66 157 - -
Vian8g01098 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 157 IPR013083 -
Vian8g01098 298 SUPERFAMILY RING/U-box 108 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01098 Vian-Chr8 28938551 28939447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01098 4 258 Rapid Response to Elicitors AT3G05200 30.094 2.26e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01098 K10664 - gmx:102665105 261.536