Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01097 ATGCCAACAAATTCTCATCCCCAAAACACCCATTGCTACAAACAATTCCCCATCTTTTTCCCTTTTCTTTCCCAATATAACCCCCCAAACCACACTTCCCAACTTCCTACCTTCAAACTCTTCCTCACCAAACACTTCCACTCTCACCTCATTCTTCTCTTCACAAACTCTAAATCACACACCCAAATGCCTGAATCAAGTAAATTTCACATCTTTCAAAGCACCCTCTTCACATTCCTCTCCCTCTCCTTCCTCCATGCTTCCACAGCTCAAGCACAGTCTTCCATGGAGCCTGTGCCCACATACATCACCCACCACAGCTGGGAGCCCTCCGTTGCCATCACCGTTGGAGCCATCATCTTTGCTCTTCTTGTGATGGGCATCCTCTCCATCTACCTCCGCCGGTGTGCCGAGTCACGGATCATCATCACCACCACGCAGACCACCACCACTGTCCCCTGCTCCTGCGCGCAGGGGATCAACAAGGAACTCCTTAATACCTTTCCCACCCTCTTCTACTCCAACATCAAGGACCTCAAAAAGGGTGAAGAAACGCTCGAATGTGCTGTGTGCTTGACCGATTTCTCAGACAAAGATGCCCTCAGACTCCTCCCCAAATGCAACCACGTGTTCCACCCTCACTGCATTGATTCCTGGCTCGCTTCCCACGTGACATGCCCTGTGTGCCGCGCGAATCTCAGCCAGGATTCGTGCCAGGTTGCCATAACTGTTCCCACCCTTCATGATGAGGAAGTTTCCGGAAGTGAAGAAACTGTGGCAGAACCAAATCAAAACACTAACACAAACCATGCCGTGAATCAGGTTTGTGTCGGAAGTCCTGCATTGAGTGATGACACTACCAAAACAGTGTATGTAAGTGAGGAACAATCTTCATCTCCTGATGTTGTTCCTGAGTTAGAGTTAAATTCAAATTCTGTGTCTGGTGATGGGGTGGTTGTTGTTGCTGAGAGGAACCTTTCGAGGTCAAATTCCACTGGGCATTCTCTTGTGGGTGTGGAAAGGTACACGTTGAGGTTACCGGAAGACGTGAGGAGGTACATTCTGGTGAATCATGGAAGGAGTGTTCAGCGTTCTGCTAGTGTTAAGGGTACGTGTTGGAGTGATAGCGAAGAGAGTTATGCCGGGAAGAGGGTGGAGAAGAGGTGGGTGATTTGCACGCCGCCATTTGTGGCAAGCCATGGCTGA 1206 0.4959 MPTNSHPQNTHCYKQFPIFFPFLSQYNPPNHTSQLPTFKLFLTKHFHSHLILLFTNSKSHTQMPESSKFHIFQSTLFTFLSLSFLHASTAQAQSSMEPVPTYITHHSWEPSVAITVGAIIFALLVMGILSIYLRRCAESRIIITTTQTTTTVPCSCAQGINKELLNTFPTLFYSNIKDLKKGEETLECAVCLTDFSDKDALRLLPKCNHVFHPHCIDSWLASHVTCPVCRANLSQDSCQVAITVPTLHDEEVSGSEETVAEPNQNTNTNHAVNQVCVGSPALSDDTTKTVYVSEEQSSSPDVVPELELNSNSVSGDGVVVVAERNLSRSNSTGHSLVGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGTCWSDSEESYAGKRVEKRWVICTPPFVASHG 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01097 401 Pfam Ring finger domain 187 230 IPR001841 -
Vian8g01097 401 SMART ring_2 188 229 IPR001841 -
Vian8g01097 401 CDD RING-H2_EL5-like 187 230 - -
Vian8g01097 401 PANTHER RING FINGER DOMAIN-CONTAINING 95 238 - -
Vian8g01097 401 SUPERFAMILY RING/U-box 180 236 - -
Vian8g01097 401 FunFam E3 ubiquitin-protein ligase ATL6 148 236 - -
Vian8g01097 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 237 IPR013083 -
Vian8g01097 401 ProSiteProfiles Zinc finger RING-type profile. 188 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01097 Vian-Chr8 28871989 28873194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01097 65 355 Rapid Response to Elicitors AT3G05200 36.120 1.22e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01097 K10664 - gmx:100782532 460.685