Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01090 ATGGGGTCTGAGTTTTCTTGCATGATTAGAGAGGCTAAAATGTTGGGGATGGCTCTTGGAATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAATGTGCTTTGTTGAATTTTGAATCATTATGTGATGGATGTTTTAGTCTAGATTCAGACATATTCCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGACGGTGGGTATGTTGTTTGTTATGAGATGACAGATATCGAAAGAAAACTTGGACTTGGAAGGGACTCATTGATTGCTCTCTCCTTGCTTCTTGGCAGTGATTACTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCTTGTCAGATAGTCAAATCAATTGGGGACAAAAATGTTCTTCAAAAAATTGCTTCTGAAGGACTTGGATGGGTGAAGAAAAGAAGAGGAGGCAAGAACGATTTTGGGCTGGATGATAACATTTTAGAAGTAATTAATGCTTATATGAAGCCAAAATGTCACTCAGCTGATTCAGATATTGTGCTCAAGGCTTTTGCTCAATATACGTTTCAACGTACTAAACTCCAGCAGCTATGTGCTGAATTCTTTCTGTGGCCTTCGGAGAAAACAGATGGGTATATACTTCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTAAAGTTGGACTGGACCTTCCTTTACATGAGATCCCTGTAAAGTGTCCTGTCTCAGAAATCATCAAGAGCAGAAGAGTGCATGGGAGAGAATGCTATGAGGTTTCTTTGGAAGGAATGGATGGACTAGAAACTTCAATAGTCCCTGCAGATCTTATAGAAAGTGCCTGCCGTGAGAAGATTTTGGAGTTTGAGGAAAGAAAAGCTCAACGGAAGAAACAAAATAATCAGAAAAGAAGACCAAAGAAAAAGGAAACTAATTCATCTCTTGCTGAGCTTGATCTAAAGCTTCAGAATTTGTTGCTTGATAATAGTTTGAGAGATCAAGACAACTTCAATGCCTGTGATTCTTCAGAAAGGGTATCAAGGATTGCAACTCCTATGGCTGATGAAGCTGATCTTAATACAGAAGACTTGTTGCATCTATCACATGACATAGAACACACTGGGTTGATTCAGAATACTAGCAACTTATATATTACCAATAAGGAAGTTTCCACTACAGGTAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACCTAAAAAAATCAATTTTTTCTCAAAATCTCTGCAACCAAGTGACCAAAATATCGAAGTGATTAATTTGAGTGATTCAGAAAATGACATGTCTGTAGAACACAAGCAGAAAGCCAAGGAACTGAGATTGTTCTTAGCTAGTATTAGGAATGAAATTCATTGA 1386 0.3853 MGSEFSCMIREAKMLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSLDSDIFLFGARTVYRDICLGDGGYVVCYEMTDIERKLGLGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKNVLQKIASEGLGWVKKRRGGKNDFGLDDNILEVINAYMKPKCHSADSDIVLKAFAQYTFQRTKLQQLCAEFFLWPSEKTDGYILPSIAERDLRRFANLRLTSSKVGLDLPLHEIPVKCPVSEIIKSRRVHGRECYEVSLEGMDGLETSIVPADLIESACREKILEFEERKAQRKKQNNQKRRPKKKETNSSLAELDLKLQNLLLDNSLRDQDNFNACDSSERVSRIATPMADEADLNTEDLLHLSHDIEHTGLIQNTSNLYITNKEVSTTGKNEIIDLLSPSPPKKINFFSKSLQPSDQNIEVINLSDSENDMSVEHKQKAKELRLFLASIRNEIH 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01090 461 SUPERFAMILY PIN domain-like 4 102 IPR029060 -
Vian8g01090 461 FunFam Flap endonuclease GEN-like 1 87 143 - -
Vian8g01090 461 CDD H3TH_XPG-like 90 133 - -
Vian8g01090 461 SUPERFAMILY Chromo domain-like 244 299 IPR016197 -
Vian8g01090 461 Gene3D - 3 86 - -
Vian8g01090 461 SMART xpgineu 17 87 IPR006086 GO:0004518
Vian8g01090 461 MobiDBLite consensus disorder prediction 295 316 - -
Vian8g01090 461 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 2 408 IPR006084 -
Vian8g01090 461 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 16 33 IPR006084 -
Vian8g01090 461 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 92 107 IPR006084 -
Vian8g01090 461 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 37 57 IPR006084 -
Vian8g01090 461 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 87 223 IPR036279 -
Vian8g01090 461 Gene3D - 87 143 - -
Vian8g01090 461 Pfam XPG I-region 20 102 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01090 Vian-Chr8 28742791 28755475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01090 19 123 Core DNA Replication Machinery Family AT5G26680 30.841 4.40e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01090 K15338 - gmx:100806919 741.495