Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01064 ATGTCAGAATCCAAGGAAGAAAATCCTGACTTTCTTCCCAAGTCAAAGCCACAGGAGGAACATGGGTTTGCCATGGATTTTGACATTGGCTTCGAAAGTCTATGGCCCTTGGATCATCTATCTTTGGTCTCCAACCCCATGTCTCCTTTTCTCTTATCCACTATCGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGTTGAAGATGAGCAAATCAGAATTGCAACTGCAGGTAACACAAAAGCAGTAATTGAAAATCCAGTTGAAAATTATGACAACAAGAAATATGTGTCACCATCTCTTGTAGCCGTGCCACCTTCAGAAAATTCAGATGGCTATTGTCTAATCAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCACTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTTCATCAGTATAGAACAGTGTCTCTGAGGTATATGTTTTCTGTGGATGGAGAGAATGATGAAATACTGGGACTTCCTGGTAGAGTTTTTCAGCAAAAAATTCCAGAATGGACTCCTAATGTTCAGTACTATTCTAGCAAAGAGTATCAGCGCCTAAACCATGCACAACATTACAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAGCCTGCAGGGCATTCATGTGTAGCTGTACTGGAGTTGATAATGACTGCACCGAAGATTAACTATGCTCCTGAGGTTGACAAAATCTGCAAAGCCCTTGAGGCAGTTAATTTAAGGAGTTCAGAGATTTTGGAGCATCCATACAATCAGGTCGTTTTCTACTATCATGCATCCCTTATCTTGTTTATTTTCTCAAAAGATATATATATATACACATACATATATATGTATGTGTGTATATGTATATATGTATGTTGTTCTGTGATTTCTATCTTACCCCTCTGTTATCACAGATATAACTTGGCAATTCTTTTAAACCAGATTTGTAATGAAGATCGCCAGCACGCATTAGCCGAGATTTTGGAGATACTGACAATTGTATGTGAGACTCATAGTTTGCCTCTAGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGTGGTGGTCATAAGAAAAGTTGCTCAAGTTTTGATGGTTGTTGCATGGGGCAAGTATGCATGTCTATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCACGAGGCTTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCTCACAACATGTGTTTCTGTGGGAACATTACTCAATTCTGCAAAACTGAATATCCCTTAGTACATTATGCTCTCATGTTTGGTTTAACCAGCTCTTTTGCAGTATGCTTACAAAGCTCTCATACAGGAAATGATGAATATGTGATAGAGTTTTTTCTTCCGCCAAGGATCACAGAATTTAATGAACAAAAGACTTTGTTGAGGTCAATATTGGCCACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGCAGAATTGTTCAATTGAAATTATAGAACCAAGAAAAGAAAGAGTTCATTTGTGGTTTGAATCAATTCCAATTACTCAATCTTCTATGTCGCCACCTAGACATGCCTCCCCAAGTATGGGGGAGAGGCTGCCACTGGAGCCATCTGAGCAGCAAATAACAACAGACTTTGATGACATAAATGATGGAAGGAATCTCGGTGATAATACAGATGGGCACATTGATCAGAATACTTCCTTGGAACCCAGAACCAAAAAGAAACCCTCAGAGAGAAAACGTGGAAAAGCTGAGAAATCTATTAGTCTTGATGTTTTGCAACATTACTTCACTGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAACGCATCTGTAGGCAACATGGGATATCGCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTATCCAAGCTAAAGTGTGTCATTGAATCAGTCCATGGTGCTGAAGGTGCCTTTGGTTTGAACTCTCTAAGTAATGGTTCACTTCCCATTGCTGCTGGTTCCTTTTCTGAGCCCTCCACTTCAAACAAGTTCAACTGCCAAACCTCATTGACCATTAGGCCATCAGAACCTAAGATCAATGAACAAGATTTTGATGCTTCTAGAGCATCAGAAAAAAACAGACAAGCTGGGTTGGAAGCTCACTTTTTAAGTACAAGGACACAAAATCCTGAGAAAGCGATTAATGAAAAAGTTGTGGCCGTTCAGGAGATTGGCACTAAAGGTACAACCAGGTTTAGAACTGGGAGTGGCTCAAGTGAAGAGAGTGCAAATCCTTCTCCTCATGGTTCATGCCAAGGTAGTCCCCCAAATGAAATGTCCCCTCCAAAAGATATATTTGTAACAGGTACCAGTGAGCAATGTCTTGTTTTAAGGGGATCACTGGGGTCAACACTGCACTCAACTAGTACACCCAACCGTGCAACTGCAAACCCTATGCCTAATTTTGTGGAAACCACAGAACCTCAAGAACCATTTGGAGGACAACTTCTTGAGGGTGTTGGTAGTTCTAAGGACTTGAGGAATCTATGTCGTTCAGCCGATGCTGTTTTGGAGGATCAGGTTCCAGAACCTTGCAGGATGAATCCTCAATGTTCTGATTTGGCTCCTGTGCAGCACATGGATACTAATAACATGACACCTTTCGCAGTTAGGAAAGAGTTGAAGAATGTGACCATTAAGGCAAGTTACAAAGAAGATATCATAAGGTTTAAGATCTCTTTGAACTGTGGCATTGTGGAATTAAAAGAAGAAATTGCCAAAAGATTGAAACTAGAGGAGGGAACATTTGATATCAAGTATTTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCATCAGGCAGCAACATAATCAGGCTTGTGGTGCATGATATTCTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGAGATTGGAAAGGTTGTATATAG 3123 0.4131 MSESKEENPDFLPKSKPQEEHGFAMDFDIGFESLWPLDHLSLVSNPMSPFLLSTIEQPFSPVWAFSDVEDEQIRIATAGNTKAVIENPVENYDNKKYVSPSLVAVPPSENSDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLRYMFSVDGENDEILGLPGRVFQQKIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGHSCVAVLELIMTAPKINYAPEVDKICKALEAVNLRSSEILEHPYNQVVFYYHASLILFIFSKDIYIYTYIYMYVCICIYVCCSVISILPLCYHRYNLAILLNQICNEDRQHALAEILEILTIVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNITQFCKTEYPLVHYALMFGLTSSFAVCLQSSHTGNDEYVIEFFLPPRITEFNEQKTLLRSILATMKPHFQSLKIAAGVELEQNCSIEIIEPRKERVHLWFESIPITQSSMSPPRHASPSMGERLPLEPSEQQITTDFDDINDGRNLGDNTDGHIDQNTSLEPRTKKKPSERKRGKAEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSNGSLPIAAGSFSEPSTSNKFNCQTSLTIRPSEPKINEQDFDASRASEKNRQAGLEAHFLSTRTQNPEKAINEKVVAVQEIGTKGTTRFRTGSGSSEESANPSPHGSCQGSPPNEMSPPKDIFVTGTSEQCLVLRGSLGSTLHSTSTPNRATANPMPNFVETTEPQEPFGGQLLEGVGSSKDLRNLCRSADAVLEDQVPEPCRMNPQCSDLAPVQHMDTNNMTPFAVRKELKNVTIKASYKEDIIRFKISLNCGIVELKEEIAKRLKLEEGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNIIRLVVHDILPILGSSCESSGDWKGCI 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01064 1040 SUPERFAMILY CAD & PB1 domains 940 1025 - -
Vian8g01064 1040 PANTHER PROTEIN NLP8 57 1034 IPR045012 GO:0003700
Vian8g01064 1040 SMART PB1_new 940 1022 IPR000270 GO:0005515
Vian8g01064 1040 MobiDBLite consensus disorder prediction 791 821 - -
Vian8g01064 1040 MobiDBLite consensus disorder prediction 612 631 - -
Vian8g01064 1040 FunFam RWP-RK domain-containing protein 937 1021 - -
Vian8g01064 1040 Pfam PB1 domain 941 1021 IPR000270 GO:0005515
Vian8g01064 1040 ProSiteProfiles RWP-RK domain profile. 618 701 IPR003035 -
Vian8g01064 1040 ProSiteProfiles PB1 domain profile. 940 1022 IPR000270 GO:0005515
Vian8g01064 1040 CDD PB1_NLP 941 1021 IPR034891 -
Vian8g01064 1040 Gene3D - 938 1024 - -
Vian8g01064 1040 MobiDBLite consensus disorder prediction 590 631 - -
Vian8g01064 1040 MobiDBLite consensus disorder prediction 789 828 - -
Vian8g01064 1040 Pfam RWP-RK domain 634 681 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01064 Vian-Chr8 28027136 28031789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01064 251 287 NLP Transcription Factor Family AT4G24020 72.973 1.15e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian8g01064 PB1 6.8e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01064 - - var:108346096 2084.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01064 8 28027136 28031789 Vian3g00643 3 6547575 6551663 PCT