Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01058 ATGAAATTTTCTCTTGATAAGGCAAGCCAGCTATGCATAACTCTCAACTTTCTTTCCAACAATTTTCTCGCCGATTTACTTCCCGCCAAAACACACTGTATCCCTTCGGCGCCGCTTCACCGATCCTCGCGCCTGTCCTCCGTGTCGGAACTCTCTCTGCCTCCTCATTTCCGTCAATTTCCACTTGCAAAACTTAAAGCTTCTAGCTCGGCCGATGTCATGAATACAGAAGAGAAAGATACGATTGGCGGAGAATCTTCCCTTCATTTTCCCACACCCGATGGCAACTCTGATCATTTGCTTCATTTACTCTATGCTTTAGATTCACAAGGTGTTAACAATTCTTTTTCAAGTTTGAGTGTTCATATCTTTGGAGGTTGGCCTTTGCTCTCTCCTCTGAACGTTCAGTTGCATAAGTGTGACAAATGTTCTCGAGAGTTTTGCTCCCCCATGAACTATAGAAGACATATTCGTGTAGATCATAGGAAGAAAAATCTTGATAAGGAATTTACAAAAAATAGGGATCTTTTAGAAGCATATTGGGATAAGCTCTCTGCAGAAGAGGCAAAGGAAGTTATATCATTGGAAAATGTGGTGCTGGAGGAAGTTCCGGGTTCTTCAATTTTAAAATCATTGAAAACTCTTGTTCTAAACCAAAGGTTTTATTCATTTCCTGCGCATTATCTGATGGCTGGTACTGTCCTTTTGGATATTCTTCAAGCTAAATCTTCCAGCTTTCCTATATCTTCCCAAGTGTTGTTCAATATTCTTGATGAGGCCAGTGAAAAAACATTTTTATGCGGAACAGCGGAGTCAGTGCAAAGATATGTATTTGTTGGAGATGCGGGAAATAATGGTCTTGAACTGAGAAACATAATTGCTTTCACAAGTTTCCTGCTAGAACAAAAATTGTATGAGCTTTTGTTCACTAAGGTGAAGGCGTGGCTTACTGCCAAGGAAGCCGAAGCACTTAGGTGTCAGAAGCAATTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAGAAGCTTAGACAAAAAGAGCAGAAAGCTAGGGAACAAAGACACAAAGCTGAGGCAGAAATTAACGGCTATATTGAGAGTGCTGTAAAGGCTTTATCACTGAGTGAAGCATCTTTAGAAACGCACAATTTTGAAGCTCATAATCCGAATGCATTTTCAGACAACGTAGCTTCACCTGTACCTCCCCAATATATTGACACCAATAAGGAAATAAATGAGGATACTCGTTCGGAGTATGATACTATCGCTGATCAGAATCTTGAGAGATGGTCTGAAGCTGAGGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACTTTGAAGTCAATCAGAAACATGAAGCTCATAATCCGAATGCATTTTCAGATAACGTAGCTTCACCTGTACCTCCCCAATGTATTGACACCAATAAGGAAATGAATGAGGATATTCGTTCAGAGTATGATACTATCGCTGATCAGAATCTTGAGAGATGGTCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGAAACATGAAGCTCATAATCCGAATGCATTTTCAGATAACGTAGCTTCACCTGTACCTCCCCAATGTATTGACACCAATAAGGAAATGAATGAGGATATTCGTTCAGAGTATGATACTATCGCTGATCAGAATCTTGAGAGATGGTCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGAAACATGAAGCCAACAATGATAACAAGGCATCAGCTATTGGTCGTGGTAGTGAAGTATGGAGTCCAAAGTCTGAAGAGGAAATTGACAAGGTGGTTTTAAAAACCACACAAGAGAAAAAACCGGACCAACTTAAGAACCAACTTTTGATAGGATCTATATCTATTAATATTGACAATTGCAAACAATCAGAGGGTAATATGGTGACTTCTCAAAAGGATTCTATGGTTGAGAATGTGGGTAAGGAGAATAGTTCTTGGGATAAGCCAATGAATACTGATCCTGTCAGCCAGCATGAAACTGAAGATCAAGTTCCAGTTCAAAGTGACGAGACAGAAGTAAGCATGGGTAGTACAGAGAGAACAGCGGATATTAGAAGATTCCAGTCCTTCATCCAGGAAGCAAAAGCTTTCCTTGCAAGAAGATGGGAAGAAGCTCTGGCATCAGATCATGTGGTATTGCATATTAGCTCTGACTCGGAATCTTCATCGTCCGAAGAAACGCAGGATTCTATAGCAGATACCAAATTGCCTGCAACCTCCGGAGCAAACCCGGATTGA 2355 0.4098 MKFSLDKASQLCITLNFLSNNFLADLLPAKTHCIPSAPLHRSSRLSSVSELSLPPHFRQFPLAKLKASSSADVMNTEEKDTIGGESSLHFPTPDGNSDHLLHLLYALDSQGVNNSFSSLSVHIFGGWPLLSPLNVQLHKCDKCSREFCSPMNYRRHIRVDHRKKNLDKEFTKNRDLLEAYWDKLSAEEAKEVISLENVVLEEVPGSSILKSLKTLVLNQRFYSFPAHYLMAGTVLLDILQAKSSSFPISSQVLFNILDEASEKTFLCGTAESVQRYVFVGDAGNNGLELRNIIAFTSFLLEQKLYELLFTKVKAWLTAKEAEALRCQKQLVEEEEAAQKRQAEILERKRQKKLRQKEQKAREQRHKAEAEINGYIESAVKALSLSEASLETHNFEAHNPNAFSDNVASPVPPQYIDTNKEINEDTRSEYDTIADQNLERWSEAEDLHTDQISPLPNFEVNQKHEAHNPNAFSDNVASPVPPQCIDTNKEMNEDIRSEYDTIADQNLERWSEADDLHTDQISPLPNLEVNQKHEAHNPNAFSDNVASPVPPQCIDTNKEMNEDIRSEYDTIADQNLERWSEADDLHTDQISPLPNLEVNQKHEANNDNKASAIGRGSEVWSPKSEEEIDKVVLKTTQEKKPDQLKNQLLIGSISINIDNCKQSEGNMVTSQKDSMVENVGKENSSWDKPMNTDPVSQHETEDQVPVQSDETEVSMGSTERTADIRRFQSFIQEAKAFLARRWEEALASDHVVLHISSDSESSSSEETQDSIADTKLPATSGANPD 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01058 784 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 64 711 - -
Vian8g01058 784 MobiDBLite consensus disorder prediction 680 719 - -
Vian8g01058 784 MobiDBLite consensus disorder prediction 587 620 - -
Vian8g01058 784 MobiDBLite consensus disorder prediction 467 481 - -
Vian8g01058 784 MobiDBLite consensus disorder prediction 467 486 - -
Vian8g01058 784 Coils Coil 316 377 - -
Vian8g01058 784 MobiDBLite consensus disorder prediction 755 784 - -
Vian8g01058 784 ProSitePatterns Zinc finger C2H2 type domain signature. 140 161 IPR013087 -
Vian8g01058 784 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 166 IPR013087 -
Vian8g01058 784 MobiDBLite consensus disorder prediction 591 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01058 Vian-Chr8 27930733 27936734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01058 522 762 C2H2 Transcription Factor Family AT4G25610 26.545 3.61e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian8g01058 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01058 - - vra:106765971 1063.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01058 8 27930733 27936734 Vian8g01058 8 27930733 27936734 ECH
Vian8g01058 8 27930733 27936734 Vian3g00648 3 6589052 6594268 PCT