Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01041 ATGGCAGGTAAGGTGGTGAAGAAGGAAGAGTCTCTGAACCTGAAAGTCACCAACAAGAGTTATGTGCAACCTGAGGAGAAGATTGGGAGAAAAGAGTACCAGTTGGTGACTTTTGATCTTCCATACTTGGCCTTCTACTACAACCAGAAGCTACTGTTCTACAAAGGGGAAGACTTTGATGGCATGGTTCAGAAGCTGAAGCTTGGACTTGGTGTGGTTCTCAAGGAGTTTCACCAACTGGCTGGAAAGTTAGGGAAAGATGAAGAGGGTGTGTTCAGGGTTGAGTATGATGATGACATGCTTGGTGTGGAGGTTGTTGAAGCTGTTGCTGATGACATTGCTGTGGATCAACTTACTGTGGCTGAAAGTTCCACCAATCTCAAGGACCTCATACCTTACACTGCTGTCTTGAACTTGGAAGGCATGCATAGACCCTTGCTCGCAGTTCAGGTCTTTGATTTTTCTTACAACCTTGTTTTACTATCTAATTTGAAAGAGGTTTTGGTTGGTTTCATTGACAGCCATTTGTTAACGAAGCTGAAAGATGGGCTTGCGATGGGCCTGGCATTCAACCACGCTGTATTGGATGGGACTGCCACGTGGCAATTCATGACATCGTGGGCCGAGATTTGCAGCGGGTCACCCTCCACGTCAGCACCACCGTTCCTGGACCGGACCAAGGCCCGGAACACGAGAGTGAAGCTGAACCTCTCCCTGCCCGAGCCCAACGGCCAACCAACTTCCAACGGTGATGCAAAGCCCACTCCAACTCTTAGGGAAAGGATATTCAAATTCTCGGAGTCAAAGATCGACAAGATCAAGTCAACGATCAACGAGAACCCTCCATCGGACGGCTCAAAACCGTTCTCAACATTTCAAGCTCTTTCCTCCCATATCTGGCGCCATGTAAGCCATGCACGTAACCTGAAGCCAGAGGACTACACCGTGTTCACCGTCTTCGCCGACTGCCGGAAGCGGGTCGACCCACCGATGCCGGAGAATTACTTCGGAAACCTAATTCAGGCTATATTCACCGTTACGGCGGCTGGGCTTTTAGCGGCTCATCCGCCGCAATTCGGTGCTTCATTGGTCCAGAAGGCCATTGAAGACCACAATGCGAAGGCTATCGATGCACGTAACAAAGAGTGGGAGAGTGCACCGAAAATTTTCCAATTCAAAGATGCTGGGGTGAATTGCGTGGCTGTTGGAAGCTCACCTAGGTTTAAGGTTTACGACATTGATTTTGGGTGGGGTAAGGCTGAGAATGTGAGAAGTGGAACTAATAACAAGTTTGATGGGATGATTTACTTGTATCCAGGGAAGAATGGAGGAAGGAGCATTGATGTGGAACTAACCTTGGAGCCTGAGGCTATGGCGAGGTTGGAGAAAGATAAGGATTTTCTTTTGGAAGCATGA 1416 0.4852 MAGKVVKKEESLNLKVTNKSYVQPEEKIGRKEYQLVTFDLPYLAFYYNQKLLFYKGEDFDGMVQKLKLGLGVVLKEFHQLAGKLGKDEEGVFRVEYDDDMLGVEVVEAVADDIAVDQLTVAESSTNLKDLIPYTAVLNLEGMHRPLLAVQVFDFSYNLVLLSNLKEVLVGFIDSHLLTKLKDGLAMGLAFNHAVLDGTATWQFMTSWAEICSGSPSTSAPPFLDRTKARNTRVKLNLSLPEPNGQPTSNGDAKPTPTLRERIFKFSESKIDKIKSTINENPPSDGSKPFSTFQALSSHIWRHVSHARNLKPEDYTVFTVFADCRKRVDPPMPENYFGNLIQAIFTVTAAGLLAAHPPQFGASLVQKAIEDHNAKAIDARNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGKAENVRSGTNNKFDGMIYLYPGKNGGRSIDVELTLEPEAMARLEKDKDFLLEA 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01041 471 Gene3D - 11 238 IPR023213 -
Vian8g01041 471 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 17 157 - -
Vian8g01041 471 Pfam Transferase family 178 467 - -
Vian8g01041 471 Pfam Transferase family 14 154 - -
Vian8g01041 471 FunFam Tryptamine hydroxycinnamoyl transferase 244 465 - -
Vian8g01041 471 MobiDBLite consensus disorder prediction 237 254 - -
Vian8g01041 471 Gene3D - 239 464 IPR023213 -
Vian8g01041 471 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01041 Vian-Chr8 27494998 27497780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01041 64 470 Monolignol Biosynthesis Gene Families AT5G48930 24.766 1.48e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01041 K19747 - gmx:100790669 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01041 8 27494998 27497780 Vian8g01041 8 27494998 27497780 ECH