Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01032 ATGTCATCGCCGGGGTTCACTGGAGGAGGTGGGGCGTCGGAGTATTTCGCCGGAGCGGGTGGATTCACCGGCAGATCCATTCCGGCGGCCACCATGAACAACCCGAACGGCGTCGCGACTGCCACCGCAAACCTCCACCCTCTCTACCGAACCCAACAACAGAACCTCCCCGCAATGTTTCTAGATCCTGCCTCGCAGATCGCTCAACGCCAAACACCAACCCTTATGGGTAAACGCACCCTCACCGAATTCCAAACCTATAACCAAACCTATAACCAAGCCTATAACCAACCCAACAACAACCCCAACCACGTCCTCTCCAACCTCTTGCTTCGTTCCGTTAAGCCTCGAACCAGTTTCTCTCAGGTTTCCATGGATAACTTTCCCGAATTGCATAACCAAAACCCTTCTCTTTACCAACAGCAGCGTTTTGGTGTTCCTTTACTCCATCAGCTCCGTCCCCAGCCCATTAACCTTCCCAGCAATGGGTCTGGGCCCATGCCAAGCCCAAATTTCGGCTATCGGAACTCTGATTTGGGCATGCCACAGAACCGGGTTCGACTTTCTGGTCCTCTTCCGGTTCCCGTTCAGGTGGCTGAGCCGGAGAAGAAGATCATGGATCACCGGCTTCTGGAATTGGAGAAACAACTTCTGGAAGATAACGATGAAGGAGAAGCCGATGCTGCGTCCGTGATAACCTCCAGCGAGTGGTCTGAAACGTATCAGAATTTAATCAGTCCCGGTCCGGTTCAGAAACTGGCTTCCACATCACCGACTTCATCAACCACGTCGTCTACTTCATCTTCTTCCTCCATCGCTTCACCTGCTTCCGGATGCTCAAAGCAGACTCTCATGGAAGCCGCATCTGCAATTGTTGAAGGAAAATATGACATGGTTACTGAGATCCTGAACCGGTTGAACGGTCCGAACCGGACTGACAAATTAACCGATTGCATGGTGTTGGCGTTGAAGTCCAGGATGAATCCGGTGGAATATCCGCCTCCAGTGAAGGAGCTTTTCGGCTATGAACACGCTGAGTCCACTCAGTTGATTTTGGAAAACTCCATGTGCTTTAAGGTAGGGTTAATGGCTGCGAATCTGGCGATTTTGGAAGCTGCATTTGAGGAGAAAACCGAAAACAAATTCTGCGTGGTGGATTTTGAGATTGGACAGGGAAAGCAGTATCCGCACCTCATCAACGCGCTCTCAGCACGTGTACAAAACGTCACGCTCAAAATAGTGGCTGTGGCCGAGAGCGGCAGCGAAGACAGAGTACACATCGTCGGAGACATGCTGAGTCGTCTAGCAGAAAGGAAGAGGATCGGGTTCGAGTTCAGACTTGTATCAACTCAGAAACTCACCGAGTTGACTCGCGAGTCGCTGGGATGCAATGAGGACGAAGTTCTCATGGTGAACTTTGCTTTCAAGCTTAACAAAATCCCTGATGAGAGCGTCTCTACAGAAAATCCTCGTGACGAGCTTCTCCGGCGCGTGAAGGGACTCGCACCGCGCGTGGTGACAATAGTGGAGCAGGAGATGAACGCAAACACAGCACCTTTTTTGGCTCGCGTGGCAGAAACGCTGTCGTTTTATGGTGCCTTATTGGAGTCCATGACATCTAGGGATAACAATAACACCATCAACAGCTCTGACCGAGTCAGACTCGAAGAAGGACTGACCCGCAAGCTACACAACTCAGTAGCATGCGAAGGCAGAGATCGCATAGAGCGTTGTGAAGTGTTTGGAAAATGGCGAGCGCGCATGAGCATGGCAGGGTTCGAGTTAAAGCCACTGAGTCAAAACATGGCCGAGTCAATAAAATCCCGACTCACTGCCACCAACAACAACAACCGAGTCAACTCGGGACTGACAGTGAAGGAAGAGAACGGTGGTATTTTCTCAGGCTGGATGGGAAGAACACTGACGGTAGCATCTGCTTGGCGTTAA 1947 0.5121 MSSPGFTGGGGASEYFAGAGGFTGRSIPAATMNNPNGVATATANLHPLYRTQQQNLPAMFLDPASQIAQRQTPTLMGKRTLTEFQTYNQTYNQAYNQPNNNPNHVLSNLLLRSVKPRTSFSQVSMDNFPELHNQNPSLYQQQRFGVPLLHQLRPQPINLPSNGSGPMPSPNFGYRNSDLGMPQNRVRLSGPLPVPVQVAEPEKKIMDHRLLELEKQLLEDNDEGEADAASVITSSEWSETYQNLISPGPVQKLASTSPTSSTTSSTSSSSSIASPASGCSKQTLMEAASAIVEGKYDMVTEILNRLNGPNRTDKLTDCMVLALKSRMNPVEYPPPVKELFGYEHAESTQLILENSMCFKVGLMAANLAILEAAFEEKTENKFCVVDFEIGQGKQYPHLINALSARVQNVTLKIVAVAESGSEDRVHIVGDMLSRLAERKRIGFEFRLVSTQKLTELTRESLGCNEDEVLMVNFAFKLNKIPDESVSTENPRDELLRRVKGLAPRVVTIVEQEMNANTAPFLARVAETLSFYGALLESMTSRDNNNTINSSDRVRLEEGLTRKLHNSVACEGRDRIERCEVFGKWRARMSMAGFELKPLSQNMAESIKSRLTATNNNNRVNSGLTVKEENGGIFSGWMGRTLTVASAWR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01032 648 MobiDBLite consensus disorder prediction 153 188 - -
Vian8g01032 648 ProSiteProfiles GRAS family profile. 263 648 IPR005202 -
Vian8g01032 648 MobiDBLite consensus disorder prediction 248 277 - -
Vian8g01032 648 Pfam GRAS domain family 281 648 IPR005202 -
Vian8g01032 648 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 254 620 IPR005202 -
Vian8g01032 648 MobiDBLite consensus disorder prediction 155 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01032 Vian-Chr8 27295228 27297174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01032 49 648 GRAS Transcription Factor Family AT5G52510 48.025 3.57e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian8g01032 GRAS 3.5e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01032 - - vun:114181888 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01032 8 27295228 27297174 Vian8g01032 8 27295228 27297174 ECH
Vian8g01032 8 27295228 27297174 Vian3g00659 3 6697136 6698941 PCT