Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01030 ATGATTGTGCATCATGGAATTGCATTCAGTGGACTAGATCTTAGTCAACCTATCATAGTTGATTATGTCAATGACATTTGTGAACTTGCTGTTTTGAGTAACGATGCGAATATTGATGATAAGAGTGAAAGCAGACTATATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTCAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCAAAACGCGGGGAGCCACGCGGCTTTGCTTTCATCCAGTATAGCACAAAAGAGGAAGCCGAATTAGCCAAGGAGAAAATGCATGGGAGGTTCGCCTGTGGCCGGCCGCTGGTTGTTCGTCTTGCTGGCGAGAAGTGCTTGCTGGAAACAGCTGATAAGTCTACAAAAGCAGCAAGTGAAGGGCACAAGATGCTTCTCATTGGTGGTGGGGGTGCCATGGGACAGACAAGTCGTACTGCAAAAATAGCTGCTATAAAAAATAAATTGAAATCCTTAGAGGAGGAGAGTACTAGGACCAAGAAGCAGAAGCAACGTGAAAATATATATTGA 573 0.4293 MIVHHGIAFSGLDLSQPIIVDYVNDICELAVLSNDANIDDKSESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGHKMLLIGGGGAMGQTSRTAKIAAIKNKLKSLEEESTRTKKQKQRENIY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01030 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 118 IPR000504 GO:0003723
Vian8g01030 190 SMART rrm1_1 45 121 IPR000504 GO:0003723
Vian8g01030 190 SUPERFAMILY RNA-binding domain, RBD 37 127 IPR035979 GO:0003676
Vian8g01030 190 CDD RRM_RBM18 45 123 IPR039157 -
Vian8g01030 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 125 IPR000504 GO:0003723
Vian8g01030 190 Coils Coil 163 183 - -
Vian8g01030 190 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 39 127 - -
Vian8g01030 190 Gene3D - 41 134 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01030 Vian-Chr8 27235980 27237306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01030 44 126 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 3.55e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01030 K24527 - gmx:100806572 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01030 8 27235980 27237306 Vian8g01030 8 27235980 27237306 ECH