LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian8g01029	ATGGAGACTCAAAAGCTAATTATACATCTCATTCTTCTTCTCCTTTGCATTCCTTGTTCATCCTCTTTCACTCCCATAGATAACTACCTTCTTAGCTGTGGATCACAGAACAATGCTTCTCTCTTCAATCGCATCTTCATTGGTGATTCCACCAACCAAGTCTCAAGTTTTCTCTCTGCTGACAAATCCATTTCCCTCACCAACCAAAACCCTCCTCCGGATTTGCCCATTTTGTATCACACGGCAAGAGTTTTCCCCAGCACAGGAAGCTTCAGGTTCAACGTGAGAAAGCATGGCACCCAATTGGTTCGTTTTCATTTCTCACCTTTTAAGGCTCAAGGGTTTGATCTAAAAGCTGCTAACTTCAGTGTCTTGGTTGATGGTAATTTGGTGCTTAGAAATTTCAAGCCAAGTAATGGTGTGTTGCTTAAGGAGTTTATTCTGAAGATAGAGTCAAATTTACTTGAAATTGTGTTTAGACCTGAAGGTAACTCAGGTTTTGGCTTTGTAAATGCTATGGAGGTGTTCACTGCTCCTGTTGATTTTGTTATAGATTATGGAGCAAGGTTAGTGGGTCCTTTTGGTGTGGTAGAGTACAAGAACCTTTCATCTCAGGTTTTGGAAACTGTCCATAGGATTAATGTTGGGGGTGCGAAAGTAACTCCTTTTAATGACACCCTTTGGAGGACATGGATTCCTGACGAGGAATTTCTGGTTTTTAAGGATGCTGCTAAGCCTGCGGTGAGTAATCAAACACCAAATTTCCAGAAAGGAGGCGCCACTAGGGAGATCGCGCCAGATAGTGTTTACATGACTGCACAGGAAATGGATAAGGATCACGCCATTATAGGTTCACAGTTCAACATAACCTGGGATTTTCCAGTGGCTCCAGGTGGTGTTCGGCACTTGATTCGGTTGCATTTCTGTGATATTGTTAGTCCTGTTCTTAATTTGCTCTATTTTGACGTGTATATCAACGGATATTCTGCATACAAAGATTTGGATTTGTCATCCCTTGCAGTCCATGTGCTTGCATCTCCGGTCTATGTGGATTTTGTTGCAGATTCTAATGATTCAGGTGTTATTCGAATAAGTGTTGGCCCTTCTGAACTGAGCGGTTCTAGGGGGATGAATGCCATTCTGAATGGGGCAGAGATAATGCAGCTGGTGAATGTTGTGGACTCACGTGTTGTTCCTGGGAAGAAGAGGTTATGGATATTGGTGGGTTCAATTGCAGGTGGTGTTGTTGTTTTGCTTTTAGTTATGTCTGCTTTTGTGCTTGCTCTCAAATGCAGGAAGAAGAAGAAGAAGAAGAAACCAAAACAAAGAACACTGGAAAGTGTAGGATGGACTCCTTTACGTGTGTTTGGGGGGAGTTCACTTAGTAGAATGTCTGAAGGAACAGCTTTTCCCTCTCCTGGTTCTTATGGTTATTTCGGATTGAGAATCCCTTTTGCTGATATACAATTAGCCACAAATAACTTCGATAGGAGTCTAATTATAGGATCTGGTGGGTTTGGTATGGTTTACAAAGGAGTGCTCAAAGACAATGTGAAGGCTGCTGTCAAGAGAGGCATGCCTGGATCAAGACAAGGACTTCCTGAATTCCAGACTGAAATAACAATCTTATCCAAAATTCGCCATCGCCATCTTGTTTCACTGGTTGGATACTGTGAAGAAAATTCAGAGATGATACTAGTCTATGAGTATGTTGAAAAGGGTCCACTCAAAAAGCATCTATATGGTTCAGCAGTACATGCACCTTTGTCTTGGAAGCAGCGGCTTGAGATATGCATTGGTGCAGCTAGGGGTCTCCACTATCTACACACAGGTTTCGCGCAAGGAATCATACACCGTGATATCAAATCAACCAATATTTTGCTGGATGAGAACTATGTTGCCAAGGTTGCTGATTTTGGTCTCTCAAGATCAGGACCTTGTCTCAACGAAACCCATGTTAGTACTGGTGTGAAAGGAAGTTTTGGTTATCTTGATCCAGAGTATTTCCGACGGCAGCAGCTTACGGATAAGTCAGATGTTTACTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGCCAGATCTGCTGTTGATCCACAACTTGATAGGGAACAGGTGAACTTAGCCGAATGGGCACTTGAATGGCAGAAAAAAGGCATGCTGGAACATATTATTGATCCTCATCTTGTTGGGAAGATAAAGCAAAGCTCGTTGAAGAAATTTGGTGAAACAGCAGAGAAATGTTTGGCTGAATATGGTGTTGATAGGCCAACTATGGGTACTGTATTGTGGAATTTGGAATATGCACTTCAGCTCAATGAAAGTGACCAAGAAGAGGAGCCATACGATGATAGCAGTGCTCAGGAAACAGTGAATGTGAATACTACGATAACTCCTGGGAGTCCTTCTAGCAACATGAGAAGAGAGGAAAATAATGATAATGGTTATTCAGACATAAGTGCTACTGAAGTTTTTTCTCAACTAATGAAGAGTGAAGGTAGATAG	2505	0.42	METQKLIIHLILLLLCIPCSSSFTPIDNYLLSCGSQNNASLFNRIFIGDSTNQVSSFLSADKSISLTNQNPPPDLPILYHTARVFPSTGSFRFNVRKHGTQLVRFHFSPFKAQGFDLKAANFSVLVDGNLVLRNFKPSNGVLLKEFILKIESNLLEIVFRPEGNSGFGFVNAMEVFTAPVDFVIDYGARLVGPFGVVEYKNLSSQVLETVHRINVGGAKVTPFNDTLWRTWIPDEEFLVFKDAAKPAVSNQTPNFQKGGATREIAPDSVYMTAQEMDKDHAIIGSQFNITWDFPVAPGGVRHLIRLHFCDIVSPVLNLLYFDVYINGYSAYKDLDLSSLAVHVLASPVYVDFVADSNDSGVIRISVGPSELSGSRGMNAILNGAEIMQLVNVVDSRVVPGKKRLWILVGSIAGGVVVLLLVMSAFVLALKCRKKKKKKKPKQRTLESVGWTPLRVFGGSSLSRMSEGTAFPSPGSYGYFGLRIPFADIQLATNNFDRSLIIGSGGFGMVYKGVLKDNVKAAVKRGMPGSRQGLPEFQTEITILSKIRHRHLVSLVGYCEENSEMILVYEYVEKGPLKKHLYGSAVHAPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCLNETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARSAVDPQLDREQVNLAEWALEWQKKGMLEHIIDPHLVGKIKQSSLKKFGETAEKCLAEYGVDRPTMGTVLWNLEYALQLNESDQEEEPYDDSSAQETVNVNTTITPGSPSSNMRREENNDNGYSDISATEVFSQLMKSEGR	834

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian8g01029	834	CDD	STKc_IRAK	501	767	-	-
	Vian8g01029	834	Gene3D	Transferase(Phosphotransferase) domain 1	571	795	-	-
	Vian8g01029	834	FunFam	Receptor-like protein kinase FERONIA	206	391	-	-
	Vian8g01029	834	MobiDBLite	consensus disorder prediction	774	822	-	-
	Vian8g01029	834	FunFam	receptor-like protein kinase FERONIA	463	570	-	-
	Vian8g01029	834	Pfam	Protein tyrosine and serine/threonine kinase	500	759	IPR001245	GO:0004672\|GO:0006468
	Vian8g01029	834	MobiDBLite	consensus disorder prediction	786	822	-	-
	Vian8g01029	834	Gene3D	-	28	181	-	-
	Vian8g01029	834	Gene3D	-	206	390	-	-
	Vian8g01029	834	Pfam	Malectin-like domain	31	388	IPR024788	-
	Vian8g01029	834	SUPERFAMILY	Protein kinase-like (PK-like)	478	766	IPR011009	-
	Vian8g01029	834	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	616	628	IPR008271	GO:0004672\|GO:0006468
	Vian8g01029	834	PANTHER	OS07G0166700 PROTEIN	482	773	IPR045272	GO:0004714\|GO:0006468
	Vian8g01029	834	SMART	serkin_6	495	769	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian8g01029	834	FunFam	Putative receptor-like protein kinase	28	179	-	-
	Vian8g01029	834	FunFam	Receptor-like protein kinase FERONIA	571	785	-	-
	Vian8g01029	834	ProSiteProfiles	Protein kinase domain profile.	495	769	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian8g01029	834	ProSitePatterns	Protein kinases ATP-binding region signature.	501	523	IPR017441	GO:0005524
	Vian8g01029	834	Gene3D	Phosphorylase Kinase; domain 1	475	570	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian8g01029	Vian-Chr8	27230407	27232911	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian8g01029	6	834	Receptor kinase-like Gene Family	AT3G46290	49.649	0.0	761

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vian8g01029		Malectin_like	4.9e-30	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian8g01029	-		-	gmx:100787484	1456.04