Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01023 ATGGCGGTAGGACTCTCCGCCGCCATAACCTTGAAGCCCTTCCTCCGCTACCACCATCCCCACTTTCCCAAACCAATTCCAGCCACACTTCCTTTCTCTCCCTTGAGAAATTCCCACCACACAACCTTCTTGAAGACCCAAAAGTTGTCACCTTTCACTGTCTCTGTCCTAACGCAGGACCCCAAAAAAAGCACCCACATGGAAATTGAGGACCAGGAGCAGCCATCACCTTCTCCTCCACAAGTCTTGTCACCAAAGTTGGCGGAGAAGCTAGCCAGAAAAGAGTCTGAGAGGTTCACCTACCTTGTCGCTGCTGTCATGTCCAGCTTCGGGGTCACATCCATGGCAGTGCTCGCTGTTTATTACAGATTCGCGTGGCAAATGGAGGGTGGAGAAGTGCCTTGGTCTGAAATGTTTGGCACATTTGCTCTGTCAGTGGGTGCTGCTGTGGGTATGGAGTTTTGGGCTAGATGGGCTCATAAAGCTCTCTGGCATGCTTCCTTGTGGCACATGCATGAGTCCCACCATCGACCAAGAGAAGGACCCTTCGAACTGAACGATGTATTTGCCATAATCAATGCTGTCCCTGCCATCGCTCTCCTTTCCTACGGTTTCTTTCACAAGGGACTCTTCCCTGGCCTTTGCTTCGGTGCGGGTCTTGGAATTACTGTCTTTGGGATGGCCTACATGTTTGTACACGATGGCTTGGTTCATAAGAGATTCCCTGTGGGCCCCATTGCCAACGTGCCCTATTTAAGAAGAGTGGCTTCTGCTCACCAACTTCACCATTCAGAAAAATTTGATGGTGTGCCGTATGGGCTGTTTATGGGACCAAAGGTTGTTGGGGTGATCTTCACTGTTTTGTTGCTGGGATTACAAGGAGTGAGGATTGTTGAATGCAAAGTAGCCAAAGAATTGGATTGCCTTGAGTACCCTGCTATCAGCTGCAGAAAACACACTGCATTTTTGACTGATTTTGGTGGTGTTGGAGATGGAAAAACATCTAACACCAAGGCCTTTCAATATGCAATTAGCAACCTCAGTCATTATGCATCTGATGGTGGAGCTCTACTTGTTGTGCCACCAGGGACATGGCTAACAGGAAGCTTGAATCTCACAAGCCATTTCACCCTTTTCCTCCAAAGTGAAGCTACCATTCTTGCATCTCAGGATGAATCAGAGTGGCCAACACTTGCTGTTCTACCATCATATGGCAGAGGAAGAGATGCTCCCGATGGAAGATTTAGTAGTCTCATTTTTGGAACTAACCTCACCGATGTAGTAATCACTGGTTACAATGGGACAATTGATGGACAAGGATGTTATTGGTGGGACAAGTTCCACAAGGGTGAATTGAAACTCACCAGGCCTTACACAATTGAGATTATGTTCTCTAATCACATCCAGATATCAAATCTTACTCTGATCAATTCTCCATCTTGTGACATCATAATTCAGGGACTGACCATTCTTGCTCCTATTGACTCTCCTAACACAGATGGAATAAATCCAGATTCTTGCACCAACACTAGAATTGAAGATTGCTATATTGTCTCTGGTGATGATTGTATAGCAATAAAAAGTGGGTGGGATGAGTATGGAATAAAATTTAGAATGCCAAGCCAACACATCATAATTAGAAGGCTTGAATGTGTATCCCCTGATAGTGCTATGATTGCTTTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAGATCTTACAGCTATCAACACCGAATCAGCAGTTAGAATAAAAACTGCAGTTGGTAGAGGTGGATATGTGAAAGACATATTTGTGAAAGGGATGAACTTGAAGACAATGAAGTATGTGTTTTGGATGACAGGTTCTTATGGCTCCCACCCTGACCCTGACTTTGATCCCAAAGCACTTCCCAACATTTCTGGAATAAACTACAGAGATGTCTTTGCAGATAATGTAACATATTCTGCAAGACTTGATGGAATTGCTAATGATCCTTTTACAGGAATCTGCATTTCTAATGTCACTATCCATAGTGGTGATAAGAAATTGCAATGGAATTGCACTGATGTTGAGGGTGTGACAAGCAATGTGTATCCTAGGCCTTGTGAATTGCTGCCAGAGAAGAAAGAGAAAATTGAGTGTCCTTATCCAGATGACAAAGTGCCCATCGAAAGTGTTCAGCTGAAGACTTGTTCCTTCAAAAGTGTGTCATTCTTTTGA 2214 0.4453 MAVGLSAAITLKPFLRYHHPHFPKPIPATLPFSPLRNSHHTTFLKTQKLSPFTVSVLTQDPKKSTHMEIEDQEQPSPSPPQVLSPKLAEKLARKESERFTYLVAAVMSSFGVTSMAVLAVYYRFAWQMEGGEVPWSEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFHKGLFPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRRVASAHQLHHSEKFDGVPYGLFMGPKVVGVIFTVLLLGLQGVRIVECKVAKELDCLEYPAISCRKHTAFLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGALLVVPPGTWLTGSLNLTSHFTLFLQSEATILASQDESEWPTLAVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGCYWWDKFHKGELKLTRPYTIEIMFSNHIQISNLTLINSPSCDIIIQGLTILAPIDSPNTDGINPDSCTNTRIEDCYIVSGDDCIAIKSGWDEYGIKFRMPSQHIIIRRLECVSPDSAMIALGSEMSGGIQDVRAEDLTAINTESAVRIKTAVGRGGYVKDIFVKGMNLKTMKYVFWMTGSYGSHPDPDFDPKALPNISGINYRDVFADNVTYSARLDGIANDPFTGICISNVTIHSGDKKLQWNCTDVEGVTSNVYPRPCELLPEKKEKIECPYPDDKVPIESVQLKTCSFKSVSFF 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01023 737 PANTHER PECTIN LYASE-RELATED 289 722 - -
Vian8g01023 737 MobiDBLite consensus disorder prediction 63 84 - -
Vian8g01023 737 Pfam Fatty acid hydroxylase 148 275 IPR006694 GO:0005506|GO:0008610|GO:0016491
Vian8g01023 737 SUPERFAMILY Pectin lyase-like 314 733 IPR011050 -
Vian8g01023 737 Gene3D - 308 696 IPR012334 -
Vian8g01023 737 Pfam Glycosyl hydrolases family 28 416 689 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01023 Vian-Chr8 27106388 27114923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01023 309 729 Glycoside Hydrolase AT3G48950 70.345 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01023 - - gmx:100785005 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01023 8 27106388 27114923 Vian3g00665 3 6740447 6742298 ECH
Vian8g01023 8 27106388 27114923 Vian8g01023 8 27106388 27114923 ECH
Vian8g01023 8 27106388 27114923 Vian3g00665 3 6740447 6742298 PCT