Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01019 ATGGACCAGTCTCTGCTGAGAGGCGAAAGCAGTGGCCTCAGCTCCCGCCGGCGAGGACCGTTCCGGCGTTCCGACGCTATAACCTACGGTTCCAACTACGAGAAAGCCGCTGCGCTCATTGATCTGGCTGAAGATGGTGTTGGTCTCCCTGAACAAATTCTTGATTCATCAAACTTCCAAAATTATGCAAGATTTTATTTTGTATTCATTAAATGCAATCTCATATGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGGTAAGCAGTGACAAGCTCCTTATGAACTCTAGTTCCAGTTATATGTATTTGAGGCTTTCATACCAAAGAAAATATGATGGAAAGAAGATATTTCATTATGTACTTTACTTGGTACAGAAACCTCTGTGGTGTAAAAAACTCGCCACACATTCCTGCAACGATAGAGAGTATTTCTATTTGGGTCAATTGCCGTATCTAACTGATGCAGAATGTCTTATTTATGAGGCAATAACTCTTCTTGTGCTAATCATACATACTTTCTTCCCATTGTCATATGAAGGATCTCGTATATATTGGAAAAGTACTTTTAATCAATTGAAGGTTTTCTGTCTATTAGTTCTTGTTGTTGATACGCTGCTCTATGCCTTTTACTTGTCTCCACTGGCTTTTGATTTTCTACCTTTCAGAATTGCACCTTATATCAGAGTGGTTCTTTTTGTTCTGAACATTAGGGAGCTACGAGAAACCATCACTATCTTGTTTGGGATGCTTGACACATACTTAAATGTTTTGGCGCTGGGACTTCTGTTTCTTCTTTTTGCTAGTTGGGTGGCATATGTGTTTTTTGAGGATACAATACAGGGGAAAACAGTATTCACTTCATATGGTGCTACGTTGTATCAAATGTTTCTTTTATTTACCACATCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCTCGTTGGTACTGCCTCTTTTTTGTACTGTTTGTGCTGGTGGGGGTTTACTTTGTTACAAACCTTATCCTTGCCGTTGTCTATGATAGTTTCAAGAGTGAGCTTGTGAAACAAGTCTTTGAAAAGGATCTTCTGAGAAGAACTATGCTGGATAAAGCTTTTAATCTCTTAGATACACTTAATATTGGAGCTCTCAACAAAAATCAATGCATAAGGCTCTTTGAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGTGAAGAATTTGAGCTGATATTTGATGAGCTGGATGATAGTCATGATATAAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCAATTGCTTTAAAATTTCAGAAGGAAGATGTTATGTCTTACTTTGAGTATTTAGCATTCTACGATTGGCCCAGCTCAAAGACATTGAAAGAATTTGTAAAGAGTGCTATGTTTGGATACATAGTGTCCTTCATTCTTATAGTAAATCTGGTTGCAGTTATTATTGAGACAACGCTTGATATAGAAAACAATTCTGGTCAAAAGGTGTGGCAAGTGGTTGAGTTCATTTTTGGGTGGATATATGTAGTAGAAATGCTTTTAAAGGTTTATGCATACGGATTTGAGAACTACTGGCGGGATGGTCAAAATCGCTTTGATTTTGTTATCACGGTGATAATTGTCATTGGAGAAACTGTAACTTTTGCTGTACCTGATGATGCTCTTCCTTTTATCGCAAATGGAGAATGGATTCGTTACCTTCTTCTAGCAAGAATGTTGAGATTAATAAGACTCCTAATGCATGTCAAGAGATACCGAGCCTTTGTAGCAACTTTCTTGACTCTCATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGCATTTATTGTTCGCTTGGTGTTCAGATTTTTGGTGGAATTGTTAATGCTGGAAACCCGGAATTGGAATCAACAGCTCTTGCTGAAAATGACTATTTGGTTTTCAATTTCAATGATTACCCTAATGGAATAGTGACACTTTTCAATTTTCTTGTCACGGCAACCTGGGATGAAGTGATGACGAGTTACACGGAACTAACTGGGACTGCGTGGACTTATTTGTACTTCATTAGCTTCTACTTAATTACTGTTTTGCTGCTTTTGAACTTGGTTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGATCTTGAGTCTTCGGAAAGTTCTGAAGGAACGGACAAGGATGTTGAAGGAGATAAATATCGAAAACGGTCTATTGGCACTAAAACACGAAGCCAGAGGGTTGATACTCTTCTTCATCATATGTTGAGTGCCGAGTTGTGCCAAAATCAGCCTTCCAATACAGCAACTTGA 2331 0.3831 MDQSLLRGESSGLSSRRRGPFRRSDAITYGSNYEKAAALIDLAEDGVGLPEQILDSSNFQNYARFYFVFIKCNLIWSLSYFALIVLNFLEVSSDKLLMNSSSSYMYLRLSYQRKYDGKKIFHYVLYLVQKPLWCKKLATHSCNDREYFYLGQLPYLTDAECLIYEAITLLVLIIHTFFPLSYEGSRIYWKSTFNQLKVFCLLVLVVDTLLYAFYLSPLAFDFLPFRIAPYIRVVLFVLNIRELRETITILFGMLDTYLNVLALGLLFLLFASWVAYVFFEDTIQGKTVFTSYGATLYQMFLLFTTSNNPDVWVPAYKSSRWYCLFFVLFVLVGVYFVTNLILAVVYDSFKSELVKQVFEKDLLRRTMLDKAFNLLDTLNIGALNKNQCIRLFEELNKYRTLPKISSEEFELIFDELDDSHDIKINKDEFADICNAIALKFQKEDVMSYFEYLAFYDWPSSKTLKEFVKSAMFGYIVSFILIVNLVAVIIETTLDIENNSGQKVWQVVEFIFGWIYVVEMLLKVYAYGFENYWRDGQNRFDFVITVIIVIGETVTFAVPDDALPFIANGEWIRYLLLARMLRLIRLLMHVKRYRAFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPELESTALAENDYLVFNFNDYPNGIVTLFNFLVTATWDEVMTSYTELTGTAWTYLYFISFYLITVLLLLNLVIAFVLEAFFAEMDLESSESSEGTDKDVEGDKYRKRSIGTKTRSQRVDTLLHHMLSAELCQNQPSNTAT 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01019 776 Gene3D - 596 755 - -
Vian8g01019 776 FunFam Two pore calcium channel protein 1 462 595 - -
Vian8g01019 776 Pfam Ion transport protein 170 351 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian8g01019 776 Pfam Ion transport protein 471 716 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian8g01019 776 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Vian8g01019 776 FunFam Two pore calcium channel protein 1 242 353 - -
Vian8g01019 776 SUPERFAMILY Voltage-gated potassium channels 471 716 - -
Vian8g01019 776 Gene3D - 462 595 IPR027359 -
Vian8g01019 776 Gene3D - 242 354 - -
Vian8g01019 776 SUPERFAMILY EF-hand 367 434 IPR011992 -
Vian8g01019 776 Gene3D - 359 436 - -
Vian8g01019 776 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 3 91 IPR044581 GO:0005245
Vian8g01019 776 FunFam Two pore calcium channel protein 1 596 753 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01019 1 776 Ion Channels AT4G03560 62.934 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01019 K16900 - gmx:100806160 1258.05