Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian8g00993 | ATGGCTCATGAGGATTGGGATCTCTTTGCCATCGTTAGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAACCACACCAAACCCACCCACCGTGACTTCCACCACCACTCCCAGATCTCCAAACACCACCTCTTGCTTCGATTCCAGCCACGAGAATGCATCATTCTCTTTTCCCAATCTTCTGCAACCACCAACCAATGAGTCTCAAGAGCTTCACCAGTTGCTAATAAACTTCAACCCCACCACCACCACCACCATTTCTAGCACTATCACTAGTGCTATTGGCATCAATCCCAATTCCACTTTTTCTGACGTTGCGGGATTCATTGGACAACAGCATATACAACAAGGTCATCACCATCATCTTGTTCCTGCTCCCACAAATCACACCTCCATTGGAGCACCCTCCACTACTGGTTTTGACAGATTCCAAGAACAGCACCACCAACAGCAACATCAATCCCAAACTCCAGAACAACAGCAACGAAAGCAAAACCTGCCTCAACTTCAAGCACCCCAAACAAGTCCCATCCTTTCACCAACTACACAACCACAGACACCCAGATCAAGAAAGAGAAAAAACCACCAGAAGAAAATTGTGCGTCATGTAACCGCAGACAACCTCTCGACAGACTCATGGGCATGGCGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCGTATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTGGAGCGAAGCAACACCGAACCCAACATGTTCATCGTCACCTACACCGGCGAACACAAACACGCTAAACCCGTTCACCGTAACTCCCTCGCCGGCAGCACCCGAACCAAGCCGTCTCCAACCGGTTTACCCGAAGCCAACGAAGCTGTTTCTGGTATCAAAATAGAGAACGCGTGTTCATCGACTTCTGAGCTCTCTACGACGTCGTTGAAGTCTGGCACGCCGGAAAATGAGGAAACAGTCGCCGACGGCGAACCCGATTTCCCTGAGATGGAAGTTGATCCTGACGCGTTGTCTGACAACGACTACGACCTTTTGATACCCAATACTGGTGCCATGTCGGACGCTGTTCTCTTGGGGTTAACCAATGGAGCTCAAACAAAGGGATCGGATCGGAATAGCGAATCCGGGTTGACCCAGTCCAAATCAGACCCATTTTCCAACACGGTGTAG | 1194 | 0.4933 | MAHEDWDLFAIVRSCKAATFTATTTTPNPPTVTSTTTPRSPNTTSCFDSSHENASFSFPNLLQPPTNESQELHQLLINFNPTTTTTISSTITSAIGINPNSTFSDVAGFIGQQHIQQGHHHHLVPAPTNHTSIGAPSTTGFDRFQEQHHQQQHQSQTPEQQQRKQNLPQLQAPQTSPILSPTTQPQTPRSRKRKNHQKKIVRHVTADNLSTDSWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSNTEPNMFIVTYTGEHKHAKPVHRNSLAGSTRTKPSPTGLPEANEAVSGIKIENACSSTSELSTTSLKSGTPENEETVADGEPDFPEMEVDPDALSDNDYDLLIPNTGAMSDAVLLGLTNGAQTKGSDRNSESGLTQSKSDPFSNTV | 397 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian8g00993 | 397 | SMART | WRKY_cls | 210 | 270 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vian8g00993 | 397 | MobiDBLite | consensus disorder prediction | 327 | 346 | - | - | |
Vian8g00993 | 397 | MobiDBLite | consensus disorder prediction | 130 | 188 | - | - | |
Vian8g00993 | 397 | MobiDBLite | consensus disorder prediction | 371 | 397 | - | - | |
Vian8g00993 | 397 | ProSiteProfiles | WRKY domain profile. | 205 | 271 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vian8g00993 | 397 | FunFam | WRKY transcription factor 22 | 193 | 264 | - | - | |
Vian8g00993 | 397 | MobiDBLite | consensus disorder prediction | 301 | 323 | - | - | |
Vian8g00993 | 397 | SUPERFAMILY | WRKY DNA-binding domain | 205 | 271 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vian8g00993 | 397 | Pfam | WRKY DNA -binding domain | 212 | 268 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vian8g00993 | 397 | MobiDBLite | consensus disorder prediction | 23 | 50 | - | - | |
Vian8g00993 | 397 | Gene3D | WRKY domain | 193 | 264 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vian8g00993 | 397 | MobiDBLite | consensus disorder prediction | 116 | 199 | - | - | |
Vian8g00993 | 397 | MobiDBLite | consensus disorder prediction | 267 | 352 | - | - | |
Vian8g00993 | 397 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 5 | 349 | IPR044810 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian8g00993 | Vian-Chr8 | 26471242 | 26472716 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian8g00993 | 189 | 288 | WRKY Transcription Factor Family | AT5G52830 | 78.000 | 7.71e-52 | 175 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Vian8g00993 | WRKY | 8.4e-25 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian8g00993 | - | - | gmx:100796829 | 499.975 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian8g00993 | 8 | 26471242 | 26472716 | Vian3g00672 | 3 | 6802957 | 6804139 | ECH | |
Vian9g00621 | 9 | 7537144 | 7543473 | Vian8g00993 | 8 | 26471242 | 26472716 | ECH | |
Vian2g00567 | 2 | 6873673 | 6875255 | Vian8g00993 | 8 | 26471242 | 26472716 | ECH | |
Vian9g00197 | 9 | 1613103 | 1617973 | Vian8g00993 | 8 | 26471242 | 26472716 | ECH | |
Vian8g00993 | 8 | 26471242 | 26472716 | Vian8g00993 | 8 | 26471242 | 26472716 | ECH | |
Vian8g00993 | 8 | 26471242 | 26472716 | Vian3g00672 | 3 | 6802957 | 6804139 | PCT |