Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00993 ATGGCTCATGAGGATTGGGATCTCTTTGCCATCGTTAGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAACCACACCAAACCCACCCACCGTGACTTCCACCACCACTCCCAGATCTCCAAACACCACCTCTTGCTTCGATTCCAGCCACGAGAATGCATCATTCTCTTTTCCCAATCTTCTGCAACCACCAACCAATGAGTCTCAAGAGCTTCACCAGTTGCTAATAAACTTCAACCCCACCACCACCACCACCATTTCTAGCACTATCACTAGTGCTATTGGCATCAATCCCAATTCCACTTTTTCTGACGTTGCGGGATTCATTGGACAACAGCATATACAACAAGGTCATCACCATCATCTTGTTCCTGCTCCCACAAATCACACCTCCATTGGAGCACCCTCCACTACTGGTTTTGACAGATTCCAAGAACAGCACCACCAACAGCAACATCAATCCCAAACTCCAGAACAACAGCAACGAAAGCAAAACCTGCCTCAACTTCAAGCACCCCAAACAAGTCCCATCCTTTCACCAACTACACAACCACAGACACCCAGATCAAGAAAGAGAAAAAACCACCAGAAGAAAATTGTGCGTCATGTAACCGCAGACAACCTCTCGACAGACTCATGGGCATGGCGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCGTATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTGGAGCGAAGCAACACCGAACCCAACATGTTCATCGTCACCTACACCGGCGAACACAAACACGCTAAACCCGTTCACCGTAACTCCCTCGCCGGCAGCACCCGAACCAAGCCGTCTCCAACCGGTTTACCCGAAGCCAACGAAGCTGTTTCTGGTATCAAAATAGAGAACGCGTGTTCATCGACTTCTGAGCTCTCTACGACGTCGTTGAAGTCTGGCACGCCGGAAAATGAGGAAACAGTCGCCGACGGCGAACCCGATTTCCCTGAGATGGAAGTTGATCCTGACGCGTTGTCTGACAACGACTACGACCTTTTGATACCCAATACTGGTGCCATGTCGGACGCTGTTCTCTTGGGGTTAACCAATGGAGCTCAAACAAAGGGATCGGATCGGAATAGCGAATCCGGGTTGACCCAGTCCAAATCAGACCCATTTTCCAACACGGTGTAG 1194 0.4933 MAHEDWDLFAIVRSCKAATFTATTTTPNPPTVTSTTTPRSPNTTSCFDSSHENASFSFPNLLQPPTNESQELHQLLINFNPTTTTTISSTITSAIGINPNSTFSDVAGFIGQQHIQQGHHHHLVPAPTNHTSIGAPSTTGFDRFQEQHHQQQHQSQTPEQQQRKQNLPQLQAPQTSPILSPTTQPQTPRSRKRKNHQKKIVRHVTADNLSTDSWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSNTEPNMFIVTYTGEHKHAKPVHRNSLAGSTRTKPSPTGLPEANEAVSGIKIENACSSTSELSTTSLKSGTPENEETVADGEPDFPEMEVDPDALSDNDYDLLIPNTGAMSDAVLLGLTNGAQTKGSDRNSESGLTQSKSDPFSNTV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00993 397 SMART WRKY_cls 210 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian8g00993 397 MobiDBLite consensus disorder prediction 327 346 - -
Vian8g00993 397 MobiDBLite consensus disorder prediction 130 188 - -
Vian8g00993 397 MobiDBLite consensus disorder prediction 371 397 - -
Vian8g00993 397 ProSiteProfiles WRKY domain profile. 205 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian8g00993 397 FunFam WRKY transcription factor 22 193 264 - -
Vian8g00993 397 MobiDBLite consensus disorder prediction 301 323 - -
Vian8g00993 397 SUPERFAMILY WRKY DNA-binding domain 205 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian8g00993 397 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian8g00993 397 MobiDBLite consensus disorder prediction 23 50 - -
Vian8g00993 397 Gene3D WRKY domain 193 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian8g00993 397 MobiDBLite consensus disorder prediction 116 199 - -
Vian8g00993 397 MobiDBLite consensus disorder prediction 267 352 - -
Vian8g00993 397 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 349 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00993 Vian-Chr8 26471242 26472716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00993 189 288 WRKY Transcription Factor Family AT5G52830 78.000 7.71e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian8g00993 WRKY 8.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00993 - - gmx:100796829 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00993 8 26471242 26472716 Vian3g00672 3 6802957 6804139 ECH
Vian9g00621 9 7537144 7543473 Vian8g00993 8 26471242 26472716 ECH
Vian2g00567 2 6873673 6875255 Vian8g00993 8 26471242 26472716 ECH
Vian9g00197 9 1613103 1617973 Vian8g00993 8 26471242 26472716 ECH
Vian8g00993 8 26471242 26472716 Vian8g00993 8 26471242 26472716 ECH
Vian8g00993 8 26471242 26472716 Vian3g00672 3 6802957 6804139 PCT