Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00965 ATGGATGTGGAGACTCCATATTATCTCTTCTCATTTTTTTTAGATACCTGTATTTGCCGTAATACTTATGTTGCTAACTTAATATATATAACTATTGCATCATTGATTTTGATTGGTACTTTTTTTGAAGGAATTGTGCGTCAACAAAGCAGTGCTGCTGAAAGTTTCAATCCTCCAAAGCTTAGGAGGAATGCTTCTGCTGCATCTGATATAAGTAGCACTGCTTCCCAGGGTGGTCCAACACTTCCAGCACGTTTGAAGCGCACAAGTAGCTTGTGTTTTGATGAGAAGCTCTTTGTGCAGGCACTTTACAAGCTTTTGGTTTCTATCACAGAAACTAGTTCCATCATTTTATACATAAGGGATGTTGAGAAGCTCGTTCTTCAATCAAGGTTATATAATTTACTACAAAAAATGATAAAGAAACTATCAGGCTCGGTGTTGATACTTGGGTCCCAGATATTAGATTCAGATGACGATTGCAAAGAAGTTGATGAAAGGCTCACTGCGCTATTCCCCTACAACATTGAAATCAAAGCTCCTGAAGATGAAACTCATTCTGGCAATTGGAAAGGATCACTGGAAGAGGATATGAAAGCTATTCAGTTCCAAGATAACAGAAACCACATTGCTGAAGTACTAGCAGCAAATGACATTGAATGTGATGACTTGAACGCAATCTGCCATTCAGATACTATCGTACTCAGCAATTATATTGAAGAAATTGTAGTATCTGCAATATCTTACCATTTGATGCATACCAAGGATCCAGATTACCGAAATGGAAAGCTAGTTATATCAGCCAATAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGAATCTAACAAGGAAAATGCTGGAGAAGATGTTGCTGGTGCAAAGAATGAAGTTAAGAGTGACAATCAAGCACCTGAAAACAAGAATGAGACGGAGAAATCCATCCCGGTAACAAAGAAAGAAGGTGAAAATCCCACACCTTCAAAGGCGGAAGTTCCTGACAACGAGTTTGAGAAGCGCATAAGACCTGAGGTTATCCCAGCAAATGAAATAGGGGTTACATTTGCAGATATTGGTGCATTGGATGAGATCAAAGAATCACTTCAAGAGCTGGTAATGCTTCCCCTTAGAAGGCCTGACCTCTTCAAAGGCGGGCTTCTAAAGCCGTGTAGAGGTATATTGCTTTTTGGGCCTCCTGGTACTGGGAAAACAATGCTAGCAAAAGCCATTGCAAATGAAGCTGGTGCAAGTTTCATTAATGTCTCAATGTCCACTATTACATCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTATTCACACTGGCAGCTAAGGTTGCCCCAACAATCATCTTTGTTGATGAGGTCGACAGCATGCTTGGACAGAGGACTAGAGTAGGAGAGCATGAGGCCATGAGGAAGATAAAAAATGAGTTCATGACACACTGGGATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCTGCAACCAACAGACCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGCGCAGGGTCCTGGTTGGTCTTCCATCTGCTGAGAACAGGGAGAAGATCTTGAAGACTCTTCTGGCCAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTGTGCATCACTGCGGCTTATCGACCTGTTAGAGAGCTAATACAGCGGGAGAGAGTAAAAGAAATGGAAAAGAAGAAAAGAGAGGCTGAAGGCCAAAACTCTGAGGATGTTTCAAACAACAAAGATAACGAAGACCAAGAAATTACCCTCAGGCCTTTAAATATGGAAGACATGAAGCAGGCCAAGAGTCAGGTAGGGTGA 1926 0.4107 MDVETPYYLFSFFLDTCICRNTYVANLIYITIASLILIGTFFEGIVRQQSSAAESFNPPKLRRNASAASDISSTASQGGPTLPARLKRTSSLCFDEKLFVQALYKLLVSITETSSIILYIRDVEKLVLQSRLYNLLQKMIKKLSGSVLILGSQILDSDDDCKEVDERLTALFPYNIEIKAPEDETHSGNWKGSLEEDMKAIQFQDNRNHIAEVLAANDIECDDLNAICHSDTIVLSNYIEEIVVSAISYHLMHTKDPDYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENAGEDVAGAKNEVKSDNQAPENKNETEKSIPVTKKEGENPTPSKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFERRVLVGLPSAENREKILKTLLAKEKHENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQRERVKEMEKKKREAEGQNSEDVSNNKDNEDQEITLRPLNMEDMKQAKSQVG 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00965 641 ProSitePatterns AAA-protein family signature. 506 525 IPR003960 GO:0005524|GO:0016887
Vian8g00965 641 SMART AAA_5 399 536 IPR003593 GO:0016887
Vian8g00965 641 Coils Coil 287 307 - -
Vian8g00965 641 Gene3D - 535 604 - -
Vian8g00965 641 MobiDBLite consensus disorder prediction 595 641 - -
Vian8g00965 641 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 362 537 - -
Vian8g00965 641 Pfam ATPase family associated with various cellular activities (AAA) 403 533 IPR003959 GO:0005524|GO:0016887
Vian8g00965 641 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 640 - -
Vian8g00965 641 Gene3D - 362 534 IPR027417 -
Vian8g00965 641 MobiDBLite consensus disorder prediction 293 347 - -
Vian8g00965 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 595 IPR027417 -
Vian8g00965 641 Coils Coil 594 614 - -
Vian8g00965 641 Pfam AAA+ lid domain 555 597 IPR041569 -
Vian8g00965 641 MobiDBLite consensus disorder prediction 595 627 - -
Vian8g00965 641 MobiDBLite consensus disorder prediction 282 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00965 Vian-Chr8 25032540 25036076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00965 363 594 Calmodulin-binding Proteins AT3G56690 39.407 5.83e-43 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00965 - - gmx:100804099 1080.86