Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00958 ATGGGTTATGCTGGCAAGATGATAAAGAACATTGGGAATGACCTCATTTATTATAAAGTTACTGACTCTAGTGATGATCCTATAAATCCCAAGCCCAACACCTTGAGGTATGGAACTTCTGTTATTCAAGGTAATGTGTGGATCACATTCCAAAAGGACATGCAAATTAAACTAGAGAAACCTCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAATGTCCACATCGCTCATAATGCATGCTTAATGATCTTTAAGGCCACCAACATAATTATCCACGACATTCGAGTTCACCATTGCAAACCTCAAGCCCATGGGATCGTGATGGGGCCTGAAGGAAAGGTTATTCCTATAGGTCATGTAGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGACCATAATACACTTAATGATTGTCAAGATGGTTTGCTTGACGTAACACGAGGTTCTACTGAAGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATCTGAGAGACAAGAATATGAAGGTTATAGTGGTGTACAATCATTTTGGTCCTAATTGCAATCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAATAATTTTTATCAAGGATGGCTTCAATATGCTATTGGTGGAAGCATGGAACCTAGTCTTAAAAGTGAAGCTAACCTCTTTATGGCACCAATCATAGGAAATAAAGAGGTGACATGGAGAAAGAGTAGTGATAAAAGTGGAGGTACATGGAACTTTCATTCGATAAGGGATATTTTTGAAAATGGAGCTTCCTTCAATATAACAAAAGGAGGCGGTGTGAAAAAACCAAACTATACTAAAGAACAAAATTTTAAAGTTCTTGATGCCAAATTCGTGAGATTGTTGACGCGTTCATCTGGTGTGTTGCGATACAATAAAAATTCAGTATACTGA 984 0.377 MGYAGKMIKNIGNDLIYYKVTDSSDDPINPKPNTLRYGTSVIQGNVWITFQKDMQIKLEKPLLISSFTTIDGRGVNVHIAHNACLMIFKATNIIIHDIRVHHCKPQAHGIVMGPEGKVIPIGHVDGDAIRLVTASKIWIDHNTLNDCQDGLLDVTRGSTEVTISNNWFKNQDKVMLLGHDDGYLRDKNMKVIVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFMAPIIGNKEVTWRKSSDKSGGTWNFHSIRDIFENGASFNITKGGGVKKPNYTKEQNFKVLDAKFVRLLTRSSGVLRYNKNSVY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00958 327 SUPERFAMILY Pectin lyase-like 17 283 IPR011050 -
Vian8g00958 327 PANTHER PECTATE LYASE 18-RELATED 1 324 IPR045032 GO:0030570
Vian8g00958 327 SMART amb_all 53 250 IPR002022 -
Vian8g00958 327 Gene3D - 1 320 IPR012334 -
Vian8g00958 327 Pfam Pectate lyase 62 244 IPR002022 -
Vian8g00958 327 PRINTS Pollen allergen Amb family signature 205 224 IPR018082 -
Vian8g00958 327 PRINTS Pollen allergen Amb family signature 125 146 IPR018082 -
Vian8g00958 327 PRINTS Pollen allergen Amb family signature 24 49 IPR018082 -
Vian8g00958 327 PRINTS Pollen allergen Amb family signature 267 291 IPR018082 -
Vian8g00958 327 PRINTS Pollen allergen Amb family signature 61 77 IPR018082 -
Vian8g00958 327 PRINTS Pollen allergen Amb family signature 298 321 IPR018082 -
Vian8g00958 327 PRINTS Pollen allergen Amb family signature 227 246 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00958 Vian-Chr8 24576891 24578202 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00958 7 254 Polysaccharide Lyase AT5G09280 68.548 2.33e-136 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00958 K01728 - gmx:100780437 557.755