Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian8g00956 | ATGATAAACAACGTTGGTAATGACCTCATTCATTATAAAGTTAGTGACCCTAGTGATGATCCTATAAATCCCAAGCCCAACACCTTGAGGTATGGAACTTCTATTATCCAAGGTAAAGTGTGGATCACATTCCAAAGGGACATGCAAATTAAACTAGAGAAACCCCTTCTCATCAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAATGTCCACATCGCTAATAATGCATGCTTAATGATTTTTAAGGCCACCAACATAATTATCCATGGCATTCGAGTTCACCATTGCAAACCTCAAGCCCCTGGGATTGTGATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGTCAAGTAGACGGAGACGCAATAAGATTAGTTACTGCTTCAAAAATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTGCTTGATGCAACACGGGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAATCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATTTGTGAGAGATAAGAATATGAAGGTTACAGTGATGTACAATCATTTTGGACCTAATTGCAATCAACGTATGCCAAGGTGA | 609 | 0.3908 | MINNVGNDLIHYKVSDPSDDPINPKPNTLRYGTSIIQGKVWITFQRDMQIKLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVIPLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDATRGSTDVTISNNWFKNQDKVMLLGHDDGFVRDKNMKVTVMYNHFGPNCNQRMPR | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian8g00956 | 202 | PANTHER | PECTATE LYASE 18-RELATED | 6 | 202 | IPR045032 | GO:0030570 | |
| Vian8g00956 | 202 | SUPERFAMILY | Pectin lyase-like | 11 | 202 | IPR011050 | - | |
| Vian8g00956 | 202 | Gene3D | - | 5 | 202 | IPR012334 | - | |
| Vian8g00956 | 202 | SMART | amb_all | 47 | 202 | IPR002022 | - | |
| Vian8g00956 | 202 | Pfam | Pectate lyase | 57 | 202 | IPR002022 | - | |
| Vian8g00956 | 202 | PRINTS | Pollen allergen Amb family signature | 18 | 43 | IPR018082 | - | |
| Vian8g00956 | 202 | PRINTS | Pollen allergen Amb family signature | 119 | 140 | IPR018082 | - | |
| Vian8g00956 | 202 | PRINTS | Pollen allergen Amb family signature | 199 | 202 | IPR018082 | - | |
| Vian8g00956 | 202 | PRINTS | Pollen allergen Amb family signature | 55 | 71 | IPR018082 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian8g00956 | Vian-Chr8 | 24316126 | 24316838 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian8g00956 | 1 | 202 | Polysaccharide Lyase | AT5G09280 | 69.307 | 1.56e-113 | 324 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian8g00956 | K01728 | - | gmx:100780437 | 388.267 |