Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00955 ATGAGTAGCAATGGCGAAACTTGTAGTGCTAGTCTCGACATTAGCGCTTTAATTTGTCACGCTGCTGCTGGTGCCTCTGCAGTTGCTGTTTTGCAGCACAGAGTTTCTGCTTCCCTCAAATCCGTTCAAGGAAAATATCCTGAATGGAGGAAACACCAATATCAATTAGCCACATGTTCTGTGGGTTATGCTGGCAAAATGATAAACAACATTGGTAATGACCTCATTCATTACAAAGTTACTGACTCTAGTGATGATCCTATAAATCCCAAGCCCAACACCTTGAGGTATGGAACTTCTATTATTCAAGGTAAAGTGTGGATCACATTTCAAAGGGACATGCAAATTAAACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAATGTCCACATCGCTAATAATGCATGCTTAATGATATTTAAGGCCACCAACATAATTATCCATGGCATTCGAGTTCACCATTGCAAACCTCAAGCCCCTGGGATTGTGATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGTCATGTAGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGATCATAACACACTTTATGATTGTCAAGATGGTTTGCTTGATGTAACACGGGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGACAAGAATATGAAGGTTACAGTGGTGTACAATCATTTTGGACCTAATTGCAATCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGACATGGAGAAAGAGTAG 915 0.4011 MSSNGETCSASLDISALICHAAAGASAVAVLQHRVSASLKSVQGKYPEWRKHQYQLATCSVGYAGKMINNIGNDLIHYKVTDSSDDPINPKPNTLRYGTSIIQGKVWITFQRDMQIKLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSDMEKE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00955 304 SMART amb_all 113 303 IPR002022 -
Vian8g00955 304 Gene3D - 39 301 IPR012334 -
Vian8g00955 304 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Vian8g00955 304 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Vian8g00955 304 PRINTS Pollen allergen Amb family signature 59 76 IPR018082 -
Vian8g00955 304 PRINTS Pollen allergen Amb family signature 287 304 IPR018082 -
Vian8g00955 304 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Vian8g00955 304 PANTHER PECTATE LYASE 18-RELATED 44 300 IPR045032 GO:0030570
Vian8g00955 304 Pfam Pectate lyase 122 290 IPR002022 -
Vian8g00955 304 SUPERFAMILY Pectin lyase-like 59 296 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00955 Vian-Chr8 24288594 24291351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00955 67 300 Polysaccharide Lyase AT5G09280 72.650 2.49e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00955 K01728 - gmx:100780437 487.648