Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00946 ATGAAAGTTAGATCACTGCTTACTGCAGCCATTTATAAAAAATTATTGAGGTTATCTAGTGCGGCTAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTACAGAATTGGAGAATTTCCATATTGGTTTCACCAGTCATGGACAACAAGCCTCCAAATATGTATTGCTATAGTTATACTTTTTCATGCTATTGGAATAGCAACAATATCCTCATTGGTGGTGATAGTCCTCACTGTGCTTTGCAACGCTCCACTAGCAAAGTTGCAGCATAAGCTTCAGAGCCAACTCATGGTGGCACAAGATGAGCGATTGAAGGCGAGTTCTGAGGCTCTTACAAATATGAAAGTGCTGAAGTTGTATGCATGGGAAACTCATTTCAGAAAGGCTATAGAAAGACTTAGGAATTTGGAACTGAAACTTTTACGTTCAGTGCAACTGAGAAAGGCGTACAACATCTTTCTTTTCTGGTCCTCACCGATTTTGGTCTCTGCTGCTTCTTTTGGGACATGTTACTTCTTGAATATTCCTCTGCATGCAAATAATCTTTTCACATTTGTGGCCACCATACGCCTTGTACAGGAGCCAATTACAGCCATCCCAGATGTTATTGGGGTGGTCATTCAAGCAAAAGTCGCATTTTACCGGATTATTCAGTTCCTTAATGCACCTGAATTGCAAAGTGTAAATTTCAGGAATAAAAGTTTTGATGGCAGTAGAGGGTCAATTACAATCAAATCTGCTGACTTTTCATGGGAAGGTAATGAATCAAAGTCAACACTGAGGAACATAAACTTGGAGATCAGACAAGGGCAAAAGTTTGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTGGCTACAATTCTCGGAGAGGTTCCAAGGATAAAAGGAACTATTGGAGTTTATGGAAAGTTTGCATATGTTTCTCAAACAGCATGGCTACAGACTGGTACTATACGGGAAAATATTTTGTTTGGATCAGATTTGGATGCTCATAGATATCAAGAAACACTTCGTAGATCATCACTACTAAAGGATTTGGAGCTGTTTCCCCACGGAGACCTCACTCAAATAGGTGAGAGAGGAGTTAACTTGAGTGGAGGCCAGAAGCAGCGAATTCAACTTGCGCGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGAATACATCATGGATGGTCTGAAAGAGAAAACTGTTTTACTCGTTACTCATCAAGTTGACTTTCTACCAGCGTTTGATTCTGTTTTGTTGATGTCAAATGGGGAAATCCTAGAATCTGCTCCTTACCATCATTTGTTGTCCACAAGCCAAGAATTCCAAGATCTTGTTAATGCTCACAAAAAAACTGCTGGTTCTAACAATCCTATGAATGTGTCTTCTTCCAAGAGGCCTTCAATATCTGCTAAAGAGATTACACAAGCTTTCAAGGAGAACCAATCAAAAGACACATATGGAAATCAGCTAATAAAGGAAGAAGAGAGAGAGATAGGAGACACGGGGTTGAAGCCTTACTTGCAGTATTTGAATCAGACGAAAGGCTATGTATACTTCTTTGTGACTTCTCTTTGTCACCTCTTGTTTGTCATTTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATAACAAAGTTAGCACATTGCGGCTGATTGTTGTTTACTTCATGATTGGGGCTTTTTCTACTGTTTTTCTGCTGATCAGAACTGTACTTCTAGTTTCCTTGGGCATTCAATCATCAAAATATATATTTTTACAGTTAATGAACTCCCTTTTCCGTGCACCGATGTCCTTTTATGATTCTACACCATTGGGAAGAATACTTAGTAGGGTCTCATCAGATCTAAGCATTATGGATATTGACATCCCTTTTATTATTGCTTATACTGTGGGAGGTACTACAAACTTCTATACCAACCTCATAGTTTTAGCAATTATCACTTGGCAAATCTTGTTTATCGCTGTACCGATGGTTTACATTGCAATACGCTTGCAGAAATACTATTTTTACACCGCAAAAGAAGTGATGCGGATGAATGGCACAACAAAGTCCTTTGTAGCTAATCATGTAGCAGAAACTAATGCTGGAGTTGTGACAATAAGAGCATTTGAAGAAGACGATCGTTTCTTTGAGAAGAGTCTTGATCTAATTGACATCAATGCTAGTCCCTTCTTCCATAGTTTTGCCTCAAATGAGTGGCTGATTCAGAGATTGGAAATAGTTAGTGCAGTGCTTCTTTCCTCCACAGCACTATGCATGGTTACACTTCCACCAGGGACTTTCAGCTCTGGATTCATTGGCATGGCTCTATCTTATGGCCTTACACTAAATGCTCAACTAGTATTTTCAATTCAGAGTCAATGCAATCTAGCAAATTACATAATTTCTGTGGAGAGGCTAAATCAGTATATGCATATACCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCTTCAAATTGGCCAGTTGCTGGTAAAGTAGAGCTAAAATACTTGCAGGTACGATACAGGCCTGATGGACCACTTATACTTCATGGAATCACATGCACATTCAAAGCAGGACACAAGATTGGAATCGTTGGAAGGACAGGCAGTGGAAAGTCCACTCTTATCAGTGCATTATTCCGTCTGGTGGAGCCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCAATTGGCCTTCATGATTTGAGGTCACGTTTTGGAGTTATACCTCAGGATCCTACCCTTTTTAATGGAACTGTTAGATATAATTTAGACCCTTTATCTCAATACTCTGATCAGGAGATATGGGAGGTTCTTGGGAAATGTCAGTTACGAGAAGTTGTCCAAGAGAAATTTGAGGGTCTAAACTCCCCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAGAGGCAATTATTTTGTTTGGGGCGTGCACTTTTAAGGAGAAGTAGGATATTGGTGTTGGATGAAGCTACTGCATCAATTGACAATGCAACTGATTTGATTCTACAGAAAACAATCAGGACTGAGTTTGCAGATTGCACAGTGATTACTGTAGCACACAGGATACCAACTGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAGGTTGGTGGAGTATGATGAACCCACGAAGTTGATGGCGAAAGAAGGATCGCTGTTCAAGCAACTTGTGAAGGAGTACTGGTCTCATTTCCAATCCGCAGAATCACATTGA 3312 0.4007 MKVRSLLTAAIYKKLLRLSSAARLTHSGGEIMNYVTVDAYRIGEFPYWFHQSWTTSLQICIAIVILFHAIGIATISSLVVIVLTVLCNAPLAKLQHKLQSQLMVAQDERLKASSEALTNMKVLKLYAWETHFRKAIERLRNLELKLLRSVQLRKAYNIFLFWSSPILVSAASFGTCYFLNIPLHANNLFTFVATIRLVQEPITAIPDVIGVVIQAKVAFYRIIQFLNAPELQSVNFRNKSFDGSRGSITIKSADFSWEGNESKSTLRNINLEIRQGQKFAICGEVGSGKSTLLATILGEVPRIKGTIGVYGKFAYVSQTAWLQTGTIRENILFGSDLDAHRYQETLRRSSLLKDLELFPHGDLTQIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLLMSNGEILESAPYHHLLSTSQEFQDLVNAHKKTAGSNNPMNVSSSKRPSISAKEITQAFKENQSKDTYGNQLIKEEEREIGDTGLKPYLQYLNQTKGYVYFFVTSLCHLLFVICQILQNSWMAANVDNNKVSTLRLIVVYFMIGAFSTVFLLIRTVLLVSLGIQSSKYIFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDIDIPFIIAYTVGGTTNFYTNLIVLAIITWQILFIAVPMVYIAIRLQKYYFYTAKEVMRMNGTTKSFVANHVAETNAGVVTIRAFEEDDRFFEKSLDLIDINASPFFHSFASNEWLIQRLEIVSAVLLSSTALCMVTLPPGTFSSGFIGMALSYGLTLNAQLVFSIQSQCNLANYIISVERLNQYMHIPSEAPEVIEGNRPPSNWPVAGKVELKYLQVRYRPDGPLILHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQYSDQEIWEVLGKCQLREVVQEKFEGLNSPVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGRLVEYDEPTKLMAKEGSLFKQLVKEYWSHFQSAESH 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00946 1103 Gene3D ABC transporter type 1, transmembrane domain 1 224 IPR036640 GO:0005524|GO:0016020
Vian8g00946 1103 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 544 820 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00946 1103 CDD ABCC_MRP_domain1 248 448 - -
Vian8g00946 1103 ProSitePatterns ABC transporters family signature. 373 387 IPR017871 GO:0005524|GO:0016887
Vian8g00946 1103 CDD ABCC_MRP_domain2 855 1075 - -
Vian8g00946 1103 Pfam ABC transporter 874 1022 IPR003439 GO:0005524
Vian8g00946 1103 SUPERFAMILY ABC transporter transmembrane region 2 230 IPR036640 GO:0005524|GO:0016020
Vian8g00946 1103 FunFam ABC transporter C family member 5 506 838 - -
Vian8g00946 1103 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00946 1103 Pfam ABC transporter 266 400 IPR003439 GO:0005524
Vian8g00946 1103 SUPERFAMILY ABC transporter transmembrane region 539 837 IPR036640 GO:0005524|GO:0016020
Vian8g00946 1103 CDD ABC_6TM_ABCC_D1 1 222 IPR044746 GO:0140359
Vian8g00946 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 847 1089 IPR027417 -
Vian8g00946 1103 SMART AAA_5 883 1075 IPR003593 GO:0016887
Vian8g00946 1103 SMART AAA_5 275 448 IPR003593 GO:0016887
Vian8g00946 1103 CDD ABC_6TM_ABCC_D2 543 832 IPR044726 GO:0140359
Vian8g00946 1103 Gene3D - 225 492 IPR027417 -
Vian8g00946 1103 FunFam ABC transporter C family member 10 231 484 - -
Vian8g00946 1103 Gene3D - 841 1092 IPR027417 -
Vian8g00946 1103 FunFam ABC transporter C family member 3 840 1092 - -
Vian8g00946 1103 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 859 1091 IPR003439 GO:0005524
Vian8g00946 1103 FunFam ABC transporter C family member 10 1 230 - -
Vian8g00946 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 471 IPR027417 -
Vian8g00946 1103 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 250 471 IPR003439 GO:0005524
Vian8g00946 1103 Pfam ABC transporter transmembrane region 1 200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00946 1103 Pfam ABC transporter transmembrane region 542 791 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00946 1103 Gene3D ABC transporter type 1, transmembrane domain 505 838 IPR036640 GO:0005524|GO:0016020
Vian8g00946 1103 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1091 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00946 Vian-Chr8 24011432 24016278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00946 220 511 Calmodulin-binding Proteins AT2G36910 29.260 1.84e-24 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00946 K05666 - gmx:100787314 1976.44