Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00926 ATGGCAAAGATAAGAGAGAAGTTATACGTCACCGTTCCGAGTCTCTTCCGGTGCCCAATTTCAATGGACGTCATGCAGTCCCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCGCTGGCTTGACTCGGGACACGACACGTGTCCCGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTTCACCGCCTCATCCGCCTGTGGCTCCTCTCTGCCGAACCTCCCTCGCCGGATTCCTCTACCGACAACCTGCACTCCCTCCTCCGCCAAATCCAAACCGTTGACGATGATCTCGCCGGAACCCTCTCCAAAATCGCCGAATTCGCCACAACCTCCGGCGAAAATCGTCGGAAACTTGCCTACTTCCCCGGCTTCGACGCCGCTATCGTCCGCGCGCTGGCCAGGTGCAGTTCGCGGATAGACGCGTCTGAAAACGCGATTTACCTTCTCGACTCGGTCCTCCGAGAAAACGGAAATCCAGAGAAGATCCGAAGGCTAATTTTCGACGCTCGCCAACAATGCTTTGATTCGATGATTTTCATTTTACGAAACGGATCTTCGAAATCGAAGATTGAAACGGTTAGGTTTTTGGGGTTTCTTGCGTGCGATTTTCAGTCCTCAAAATCGATCGCGGAAACGCAAGGACTGTTGTCTTCGGTAGCGGGTTTTTTGAAGGACGGTGGAGAGGAGTTACGCGAGGCCGTTTTGTTGTTTCTAGGCGTCATTTCGGTGACTCGCTCCGCGAAGGTGGAACTAGTTAATTGCGGTGTTGTCGAATTGGTTTCGAAATTGTTACGAGATTGTTCATCGGCGAAGACGGCGGAGAGGTGTCTGAGGGTACTGGCGGTGGTGGCGACGTGCGCGGAGGGGAGGGAGGCGATGGCAGCGGAGCCTTCATGTGCAGCGGCGGTGGTGGAGAGAGTGACGAAGGCGGTGAAGGTGGCGGCGGAGGACGCAGTGGTGGTGCTGTGGAGCTTGTGCTGTTTGAGCGGTAATGTGAAGGTGAGGGATGACGTGGCAAAGCGAAACGGCGTGGCAGTGATTTTATTGGTTATGCAGAGAGGGTGGGAGGAGCACGTGAGGAGCATGTGTGTGGATTTGATTAAGGTTTTGAAGGGTGCGTGCAAGAACAACGGGTTGGGGTTGGGAACCTATGATACCAAAACCACTCATATCAAACCTTGCTAA 1218 0.5443 MAKIREKLYVTVPSLFRCPISMDVMQSPVSLCTGVTYDRASIQRWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSAEPPSPDSSTDNLHSLLRQIQTVDDDLAGTLSKIAEFATTSGENRRKLAYFPGFDAAIVRALARCSSRIDASENAIYLLDSVLRENGNPEKIRRLIFDARQQCFDSMIFILRNGSSKSKIETVRFLGFLACDFQSSKSIAETQGLLSSVAGFLKDGGEELREAVLLFLGVISVTRSAKVELVNCGVVELVSKLLRDCSSAKTAERCLRVLAVVATCAEGREAMAAEPSCAAAVVERVTKAVKVAAEDAVVVLWSLCCLSGNVKVRDDVAKRNGVAVILLVMQRGWEEHVRSMCVDLIKVLKGACKNNGLGLGTYDTKTTHIKPC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00926 405 PANTHER WDSAM1 PROTEIN 9 387 IPR045185 GO:0061630
Vian8g00926 405 Gene3D - 86 390 IPR011989 -
Vian8g00926 405 FunFam RING-type E3 ubiquitin transferase 4 83 - -
Vian8g00926 405 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Vian8g00926 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 83 IPR013083 -
Vian8g00926 405 SUPERFAMILY RING/U-box 8 81 - -
Vian8g00926 405 CDD RING-Ubox_PUB 13 65 IPR045210 -
Vian8g00926 405 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Vian8g00926 405 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
Vian8g00926 405 SUPERFAMILY ARM repeat 180 381 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00926 Vian-Chr8 22972805 22974022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00926 6 404 U-box Gene Family AT5G09800 38.741 5.19e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00926 - - gmx:100786235 608.216