Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00919 ATGCTATCAAAATATGGCCAGATTCATCCTGCTCAGCTGATAGGAATGCCTACTGCTAGAATTCCTCTGCCACTTAATCTTAGTGAGGAGCCTATATTTGTGAATGCAAAGCAGTACCATGCTATTCTGAGGGGCAAACAATACTGGGCAACACTTGAATCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCATTAAAGAGAGCCAGAGGTTCTGGTGGTCGCTTCTTGAATACAAAAAAGCATGAAGAGTCTAAACCCACTTCACAAAACCATGACATAGATGTTTCGAGGTGTACTCATTTGAATCTGAGGGGAAACATGTCAGAATCTAAGGCTCGTCAGTTGAACTACAGAGATGGTGCTTCCACAACCACCTGTTCAGATATTTCTAGTGCATCTAATAGTAGTGATCTCTTCCAGCAACATCAATCTGACATTAGATTATGTGCTTCCAGCAACATTGGTCATTCAAACTCGATATCCAATAACGGGCTTGTTGGTATAAATCCATTGTCTTTAGCTAGAAACAATATTACCGAAGGCTTTAGCCCTTCGGTGGCCTTCGGTAATTACCGAAGGCTTTTGGCCCTCGCTAGACGTGACCGTTCTGCTGCCCGTGAATAA 654 0.4281 MLSKYGQIHPAQLIGMPTARIPLPLNLSEEPIFVNAKQYHAILRGKQYWATLESQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKHEESKPTSQNHDIDVSRCTHLNLRGNMSESKARQLNYRDGASTTTCSDISSASNSSDLFQQHQSDIRLCASSNIGHSNSISNNGLVGINPLSLARNNITEGFSPSVAFGNYRRLLALARRDRSAARE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00919 217 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 156 IPR001289 GO:0003700|GO:0006355
Vian8g00919 217 MobiDBLite consensus disorder prediction 85 100 - -
Vian8g00919 217 ProSiteProfiles NF-YA/HAP2 family profile. 28 88 IPR001289 GO:0003700|GO:0006355
Vian8g00919 217 SMART cbf3 27 88 IPR001289 GO:0003700|GO:0006355
Vian8g00919 217 Gene3D - 28 89 - -
Vian8g00919 217 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 30 85 IPR001289 GO:0003700|GO:0006355
Vian8g00919 217 MobiDBLite consensus disorder prediction 84 103 - -
Vian8g00919 217 PRINTS CCAAT-binding transcription factor subunit B signature 62 85 IPR001289 GO:0003700|GO:0006355
Vian8g00919 217 PRINTS CCAAT-binding transcription factor subunit B signature 31 53 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00919 Vian-Chr8 22693673 22707770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00919 5 161 CCAAT-HAP2 Transcription Factor Family AT1G17590 52.410 9.32e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vian8g00919 CBFB_NFYA 1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00919 K08064 - gmx:100500765 220.705