Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00888 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGAGGATTTGCTCCTTCATCTCCTGGGAATGTGTTTCACTTCAATTCCGTGTTTTTTGTTTTCTTTGAGTTAGCCAGTCTTGGTGGGAATGAAAGAGGTAGATTGCACAATCTTCTAACTTGGGTTCATGTGTTGTCCATGGGAAGAGTTTCCGTTTCACCAATTCATGGTCTTCAGTTACTTCCTTTCCCCTCCATTTCCGTTCATGGGAAGCTGGCAGATCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAGTTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGCCGCAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATTCATCCTATCCAATCCCCAACACCACCACCTTCCAAGCCACCACCAGTAACAACAACAGCACTACCAGCAACACCACTGTCAATAGTCGTAACAACTACACCCTCTTCAATAATGTCTCTTCCCCCGACCACAACGCTGCCATTGTCACCTGCCACTGTTCCATCCCCAACAACACTCCCTGTGCCTCAAGGCATTCTCGCCCTCACAACCTCTTCCTTCCCATCATCAAACCCTACACCATACTTCCCAACACAAACACCAAACCCTACTACCAACAACACCAACAGCAAGAACCCTCAAAACACCATCGCCCCACCTTCTTTCCCCAACATTCCGACTGATCTCTTGTCCAATTCCAGCTCTTCCTCCACCTCTTCGGAGGAAACAACCACGGAGGGAGGGGGAGCAAGACGCAAGAGGAAGAGGAAGTGGAAGGACTTCTTTGAGAGACTCATGAAGGAAGTGATAGAGAAACAGGAGGAGCTGCAAAGGAGGTTCCTGGAGGCCATTGAGAAGAGAGAACAAGAGCGTGTCGCCAGAGAAGAAACGTGGAGAAGGCAAGAGATGCAAAGGATCAGCAGGGAAAGGGAGATTCTTGCACAGGAAAGATCCATTGCTGCCGCTAAAGACGCTGCTGTTATGGCATTTTTGCAGAAGATGGCCGAACATCAACAAGAGGAAAATAATCTTCAACCAGCATTGAATACCAACAACAACATTATCTCTATTGCTGCACAGCAACCGGTGCCACAAGCAACTCCAACACCAACACCACAGCAAAAACAAACAACAACTGTTCCCGAGGCCCCACCAGTGCAGTCCTTGGTCCCACAGCCACAGCAACATCAGGTGCAGCAACAACAACAACTAGTGATGACTAATGTGGAAACCAATAAAGCTGATAATAACGGTGAGAATTTGATGATGGGAGCGAGTTCTTCGCGGTGGCCAAAAGTGGAGGTACAAGCGCTGATAGATCTGAGAACAAACCTGGAAACAAAGTACCAGGAAAATGGACCAAAAGGGCCTCTATGGGAGGAGATCTCAGCTTTGATGAGAAAAATGGGGTACAACCGGAACGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAAGAAAGCAACAAGAAGAGGCCAGAAGATTCCAAGACCTGTCCCTATTTTCACCAGTTGGAGGCTCTATACAAGGAGAAGAACAAGGTGGAGGGCCAAATGAAGCCGGAGAGCATGATGGCACCCCTCATGGTGCAGCCGGAGCAACAGTGGCCTCCTCAGCAGGTGGTGCCCCCAGAAGTAACCATGGAAGACGCCCAGAATGACCCCATGGACGGGGGGCACCACGAGGATGGTGAGGAGGAGGAGGAGGAAGAGGAGGACAAGGACATTGGAGATGAAGACGATGATGAAGACGATGAAGGTGGTAACTATGAGATAGTAGCAAGCAAGCCAGCTTCGGCTGGTGATGCTTCTGCCGAGAAAAATGGTGGCGTGAGGGTGAATTCTGGTAGTAGTGGTGGTGGTGGAAGTAGGGTGGGGGAATCTGGGTTGGAAGTACTTGGTACAATAGCAGCATATAGTCAGGCCCTTCCCGTAGCAGAAAATGCCAGCATCACACATGGAGTCATAAACCCTTGA 2073 0.4896 MLGDSAVLGTGGGGGFAPSSPGNVFHFNSVFFVFFELASLGGNERGRLHNLLTWVHVLSMGRVSVSPIHGLQLLPFPSISVHGKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALENNPAIHPIQSPTPPPSKPPPVTTTALPATPLSIVVTTTPSSIMSLPPTTTLPLSPATVPSPTTLPVPQGILALTTSSFPSSNPTPYFPTQTPNPTTNNTNSKNPQNTIAPPSFPNIPTDLLSNSSSSSTSSEETTTEGGGARRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVAREETWRRQEMQRISREREILAQERSIAAAKDAAVMAFLQKMAEHQQEENNLQPALNTNNNIISIAAQQPVPQATPTPTPQQKQTTTVPEAPPVQSLVPQPQQHQVQQQQQLVMTNVETNKADNNGENLMMGASSSRWPKVEVQALIDLRTNLETKYQENGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKEKNKVEGQMKPESMMAPLMVQPEQQWPPQQVVPPEVTMEDAQNDPMDGGHHEDGEEEEEEEEDKDIGDEDDDEDDEGGNYEIVASKPASAGDASAEKNGGVRVNSGSSGGGGSRVGESGLEVLGTIAAYSQALPVAENASITHGVINP 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00888 690 Coils Coil 284 315 - -
Vian8g00888 690 MobiDBLite consensus disorder prediction 388 427 - -
Vian8g00888 690 MobiDBLite consensus disorder prediction 225 270 - -
Vian8g00888 690 FunFam Trihelix transcription factor GT-2 455 516 - -
Vian8g00888 690 MobiDBLite consensus disorder prediction 593 620 - -
Vian8g00888 690 MobiDBLite consensus disorder prediction 141 159 - -
Vian8g00888 690 Pfam Myb/SANT-like DNA-binding domain 453 540 IPR044822 -
Vian8g00888 690 Pfam Myb/SANT-like DNA-binding domain 81 133 IPR044822 -
Vian8g00888 690 MobiDBLite consensus disorder prediction 138 159 - -
Vian8g00888 690 Gene3D - 64 110 - -
Vian8g00888 690 Gene3D - 455 516 - -
Vian8g00888 690 SMART sant 451 513 IPR001005 -
Vian8g00888 690 ProSiteProfiles Myb-like domain profile. 453 511 IPR001005 -
Vian8g00888 690 PANTHER FI21293P1 80 589 - -
Vian8g00888 690 CDD GT1 453 518 - -
Vian8g00888 690 MobiDBLite consensus disorder prediction 581 659 - -
Vian8g00888 690 MobiDBLite consensus disorder prediction 207 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00888 Vian-Chr8 21250246 21254078 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00888 81 568 Trihelix Transcription Factor Family AT1G76880 50.787 4.67e-127 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian8g00888 Myb_DNA-bind_4 5.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00888 - - gmx:100804788 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00888 8 21250246 21254078 Vian8g00888 8 21250246 21254078 ECH
Vian8g00888 8 21250246 21254078 Vian3g00711 3 7421611 7423251 PCT