Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00887 ATGCAGCTAGGAGACTCAAGTGTGTTGGAGATCTCCTCCCATAGCGAGCCCGAGATGGCGGTGGCGGCGGCGGCGGAAGGAGCGGCTCACGGCGGCGAGGATGACGGTGGTGATGATGAGATGATTGGGGTGGATGTGGATGGAAATTCAGTTGAAGGAAATGAAGGTAATAAGATGAGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCAGTGTTTCGTGATTCAAGTCTTAAAGGTCCACTATGGGAAGAAGTTTCAAGGAAACTGGCGGGGCTTGGATATCATCGAAATGCAAAGAAATGCAAGGAAAAGTTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAAAACAAAAGTGGGAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAATCATCAGTTCACGATCTCTTACCCAACAAAGCCACAACCTACTTTGGCAACAACAAACACATTGACGTTGCCAGCTAGACAAAGTGATCATGGTAACAACAATGTTATCTCTTACGTCACACCTTTTCCTTCCACAAACCCTACACACATTTCTCCTTCACCACAAACCAATACCGACACCAACACAAACACCACCACAGTATCCACAACCAACCCTAGAGACACATCACCACCACAAACCACCACCGCCAACAACACCAACAACGACAATGTCACGTATTCTTTGCCAAACATGAACACCCCTTTCTCAACCACCACCACCACCTCCACCTCTTCTTCCACAGCATCTGATGAAGACTTGGAAGAGAGGTACCGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCCTCTTGAAGCAAGAGGAAATGCAGAAGAAGTTCTTGGAAGCCATGGACAAAAGGGAGAGGGAAAGAGTGGCGCAACAAGACAATTGGAGGATCCAAGAAATGGCAAGGATTAACAGGGAACATGAGATTCTTGTTCAGGAGAGATCAACAGCAGCAGCCAAAGATGCTGCAGTCATTGCATTATTGCAGAAGATGTACGGCCAGCAAAACACCACACAACATGTTCAAGTACAGCCACCAGAACAACAGAATCAAACAACGCTACAATCACAGCTTCCAACACCAATGCCAAACAATAACTTTGAGATCAAGAAATTGAATAATGGTCATCACAGTGCTACCAGTACTAGCACTGTCACTACTTCTCCCGCGACTTCTTCTTCTTCTAGATGGCCAAAGGCTGAAGTTCATGCTTTGATAAGGTTGAGGACAAGTCTGGACACCAAGTATCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGATATATCGATCGCAATGCAGAGGCTTGGTTACAACCGGAGTGCAAAGAGATGCAAGGAAAAGTGGGAGAACATCAACAAGTACTTCAAAAAAATGAGGGACAATAACAAAGAAAGGCGTGAAAATAGCAAAACATGTCCTTATTTTCACGAGCTTGATGCTATATACAAGGAAAGGAGCTTATCCCAGAACCCCTTTGGCGTGTTCCAGAACATGAAGCCGAACGAGATGATGATGATGGAGCCATTGATGGTGCAACCGGAGCAGCAATGGAGGCCTCCACCTCAATCGTTGGAAGAGGGTATAGAGAAGAACTCTAGCGATGAATATGAAGAAAAAGAAGAAGAAAACGATGGTGATGATGATGATCACGTTGGTGTTGAAGAAGATGAAGATGGTGTGGAAGATGAAGCGTGTGAGACTGGGACAAATGATTAA 1800 0.4528 MQLGDSSVLEISSHSEPEMAVAAAAEGAAHGGEDDGGDDEMIGVDVDGNSVEGNEGNKMSFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAGLGYHRNAKKCKEKFENVYKYNKRTKENKSGKSHGKTYKFFDQLQALENHQFTISYPTKPQPTLATTNTLTLPARQSDHGNNNVISYVTPFPSTNPTHISPSPQTNTDTNTNTTTVSTTNPRDTSPPQTTTANNTNNDNVTYSLPNMNTPFSTTTTTSTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQKKFLEAMDKRERERVAQQDNWRIQEMARINREHEILVQERSTAAAKDAAVIALLQKMYGQQNTTQHVQVQPPEQQNQTTLQSQLPTPMPNNNFEIKKLNNGHHSATSTSTVTTSPATSSSSRWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKMRDNNKERRENSKTCPYFHELDAIYKERSLSQNPFGVFQNMKPNEMMMMEPLMVQPEQQWRPPPQSLEEGIEKNSSDEYEEKEEENDGDDDDHVGVEEDEDGVEDEACETGTND 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00887 599 FunFam Trihelix transcription factor GT-2 66 127 - -
Vian8g00887 599 CDD GT1 64 129 - -
Vian8g00887 599 MobiDBLite consensus disorder prediction 366 423 - -
Vian8g00887 599 PANTHER FI21293P1 26 566 - -
Vian8g00887 599 FunFam Trihelix transcription factor GT-2 424 485 - -
Vian8g00887 599 Pfam Myb/SANT-like DNA-binding domain 422 509 IPR044822 -
Vian8g00887 599 Pfam Myb/SANT-like DNA-binding domain 64 150 IPR044822 -
Vian8g00887 599 ProSiteProfiles Myb-like domain profile. 422 480 IPR001005 -
Vian8g00887 599 MobiDBLite consensus disorder prediction 193 269 - -
Vian8g00887 599 SMART sant 62 124 IPR001005 -
Vian8g00887 599 SMART sant 420 482 IPR001005 -
Vian8g00887 599 CDD GT1 423 487 - -
Vian8g00887 599 Gene3D - 424 485 - -
Vian8g00887 599 Gene3D - 66 127 - -
Vian8g00887 599 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Vian8g00887 599 MobiDBLite consensus disorder prediction 563 593 - -
Vian8g00887 599 MobiDBLite consensus disorder prediction 193 267 - -
Vian8g00887 599 MobiDBLite consensus disorder prediction 541 599 - -
Vian8g00887 599 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00887 Vian-Chr8 21167718 21170270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00887 61 545 Trihelix Transcription Factor Family AT1G76880 49.328 2.05e-136 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian8g00887 Myb_DNA-bind_4 3.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00887 - - gmx:100807507 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00887 8 21167718 21170270 Vian3g00712 3 7442835 7445560 PCT