Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00886 ATGTCCTTCCGCAGCATTGTTCGTGATGTGAGGGATGGAATTGGAAGCTTGTCAAGGCGGAGTTTTGACTTGAGGTTTTCTGGTGGCAGCAAGTCGAATAGTTCAGTCCATGAGGTGCATGAACGCCCTCCTGTTATACAGAATAGCAGGTGGGCTAGCCTTCCCCCTGAGCTTCTTCGCGATGTTATTAGAAGATTGGAAGAAAGTGAGACAACATGGCCTTCTCGGAAGCATGTGGTTGCATGTGCTGCAGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCAGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGGGCCATTCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTGAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAAAGGACCAGAAGAACGACTTGCACAGAGTATATTATATCAATGGACGCTGACAACATATCAAGATCCAGTAGCACTTACATTGGAAAACTGAGGTCCAATTTTCTTGGCACCAAGTTCATAATTTATGATACACAGCCTCCCTACAACAACGCTCAATTGTCTCCTCCAGGTCGAAGCCGAAGGTTTAATTCCAAAAAGGTTTCTCCCAAGGTTCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCCCGCAGGATGAACTGCACCATGCACTCAATCCCTGTTTCAGCCCTTGAGCCTGGTAGCACGGTGCCCGGCCAGCCTGAGCTTCTTCCGCGTGTGCTGGAAGATTCCTTCAGGAGCATATCCTTTGCTAGATCAATTTACAGCTCAACTGATTTTAGCAGTTCTAGGTTCTCAGACATAGTTGTGGCAGGCAATGAAGAGGAGCAAGCAAAGGACATGCCTCTGGTTCTTAAAAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACTGTTGCATCTGTAAAGAATTTCCAGCTGATTGCTGCAATACAGCCACCTGCAGCCGGTGGTGGTGCTCCTCCACCACCACCGACATCACAGCCACCTCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGACATCTTTACTATGGACTATAGATATCCCCTTTCTGCATTTCAAGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1287 0.4685 MSFRSIVRDVRDGIGSLSRRSFDLRFSGGSKSNSSVHEVHERPPVIQNSRWASLPPELLRDVIRRLEESETTWPSRKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGAIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPVSALEPGSTVPGQPELLPRVLEDSFRSISFARSIYSSTDFSSSRFSDIVVAGNEEEQAKDMPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPPAAGGGAPPPPPTSQPPQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00886 428 Pfam F-box domain 51 97 IPR001810 GO:0005515
Vian8g00886 428 Pfam Tub family 112 423 IPR000007 -
Vian8g00886 428 MobiDBLite consensus disorder prediction 367 381 - -
Vian8g00886 428 Gene3D Tubby Protein; Chain A 108 428 IPR025659 -
Vian8g00886 428 CDD F-box_AtTLP-like 51 95 - -
Vian8g00886 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Vian8g00886 428 SUPERFAMILY Tubby C-terminal domain-like 100 428 IPR025659 -
Vian8g00886 428 FunFam Tubby-like F-box protein 108 428 - -
Vian8g00886 428 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Vian8g00886 428 Gene3D - 46 98 - -
Vian8g00886 428 MobiDBLite consensus disorder prediction 364 385 - -
Vian8g00886 428 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Vian8g00886 428 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Vian8g00886 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Vian8g00886 428 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Vian8g00886 428 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Vian8g00886 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Vian8g00886 428 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Vian8g00886 428 PANTHER TUBBY-RELATED 29 426 - -
Vian8g00886 428 FunFam Tubby-like F-box protein 46 99 - -
Vian8g00886 428 SUPERFAMILY F-box domain 44 94 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00886 Vian-Chr8 20867707 20870180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00886 1 428 TUB Transcription Factor Family AT1G76900 68.845 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vian8g00886 Tub 1.3e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00886 K19600 - gmx:100803729 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00886 8 20867707 20870180 Vian8g00886 8 20867707 20870180 ECH
Vian8g00886 8 20867707 20870180 Vian3g00713 3 7463125 7465608 PCT