Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00872 ATGAGAGCAACAATAACAGGGAGAGCACGGAACGGAAACCTTATATACAAATCCCCTTCACCGAAGAAAATGTCTCTGGTGGCAAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACGAACGTAGATGGTAAGCAGAACATAATGTTCGCTCTTACCTCTATCAAAGGTATTGGCAGACGATTCGCTAACATTGTCTGCAAAAAAGCCGATGTCGACATGAACAAGAGGGCTGGTGAATTGAGTGCTGCCGAGTTAGATAACCTTATGACTGTGGTTGCCAACCCAAGGCAATTCAAGGTCCCGGATTGGTTTTTGAATAGAAAGAAGGACTACAAGGATGGGAAGTATTCTCAGGTGGTTTCAAATGCACTGGATATGAAGTTGAGGGATGATTTGGAGCGGTTGAAGAAAATCAGAAATCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGAGGTCAGCATACCAAGACAACTGGTCGCAGGGGTAAAACTGTTGGTGTCTCTAAGAAGCGTTAA 528 0.4545 MRATITGRARNGNLIYKSPSPKKMSLVANEDFQHILRVLNTNVDGKQNIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKVPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00872 175 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 23 175 - -
Vian8g00872 175 Gene3D - 24 103 - -
Vian8g00872 175 Gene3D 30s ribosomal protein s13, domain 2 115 165 IPR027437 -
Vian8g00872 175 ProSitePatterns Ribosomal protein S13 signature. 144 157 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian8g00872 175 SUPERFAMILY S13-like H2TH domain 36 175 IPR010979 GO:0003676
Vian8g00872 175 Pfam Ribosomal protein S13/S18 37 165 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian8g00872 175 Hamap 30S ribosomal protein S13 [rpsM]. 35 175 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian8g00872 175 FunFam 40S ribosomal protein S18 24 103 - -
Vian8g00872 175 FunFam 40S ribosomal protein S18 115 166 - -
Vian8g00872 175 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 20 175 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian8g00872 175 ProSiteProfiles Ribosomal protein S13 family profile. 38 168 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00872 Vian-Chr8 20213202 20215592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00872 24 175 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.395 2.07e-108 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00872 K02964 - qsu:112019340 298.13