Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00861 ATGGCCCGGAGAATCTCATTATCCTTGTCTTCCTCTCATCATACATGGATTTATGATGTTTTTCTAAATTTTAGAGGTGAAGACACTCGTTTTTACTTCACTGATAATCTCTACCATTCCTTGTGCCAAAAGGGGATTCATACTTTCATCGACCAGGAAGGTCTTAGAAAAGGGGAAGAAATTACTCCTGCTCTTTTTCACGCAATTCAAAATTCAAGGATTTCCATCGTTGTCTTCTCCAAAAACTATGCATCTTCAACCTTTTGCTTGAATGAACTTGTAAAGATCCTTGAATGCGCCAAGGAAGAAGGTCGATCAATTTATCCTATATTTTATGTAGTGGATCCATCGGAAATTCGATATCAGACTGGAACTTATGCAGAGGTATTGTCAAAACACGAAGCTAAGTTCCACAATGACGCTGACAATGAGAAGGCAAAAAAATGGAGGAAGGCCTTACAGGAAGCAGCTAATCTATCAGGCTGGCATTTCCAACATGGGTCTGGATCAGAATATGAGTTTATCGAGAAGATTGTTGTAGAGATCTTTACAAAGATAAATTACATCCCGTTATATGTTCCCAATAATGGAATTGGGCTGGAGAATGCAGTGCAAGGAGTGAAATCTCTCCTTGGAGATGGGTCTGCTGTCAACATGATAGGAATTTATGGTATCGGGGGTATAGGTAAAACCACGATTGCTCGTGCTCTCTATAACACTATTTTTTGGCATTATGAAGGTTCTTGTTTTCTACCTGACATTAGAGAAAATGCGATTAATAAGTATGGGATTGTCCAGCTCCAAGAAATACTACTTTCTGAAATACTGAAGGAAGAAGATATTAAAGTGAGAGATATCAATAGAGGAATACCGTTAATTAAAAGGAGACTTGAACGGAAGAAGGTCCTTCTAGTTCTTGATGATGTTGACAAAATAGAGCAGTTAAAGGTACTTGCAGGGGAATGTGATTGGTTTGGCTCTGGAAGTATAATCATCATCACCACAAGAGACAAGCACTTGCTAGAGGCTCATGGAGTGGTAAACTTATATGAGGTTAAACCATTACATGTTGAAAAAGCTTTGGAATTGTTTAACCGGCATGCCTTCAAAAATGGTAAAGTTGATCCAGCTCATATGAATATTTCCAAACGTGCAGTTTCTTATGCGTGTGGCCTTCCGTTGGCTCTGGAAGTTATAGGATCCCACTTATTTGGAAAAAGTTTAGATGAGTGCCGTTCCGCATTAGATAAATATGAAAGTATTCCTCATGAGAAGATTCATGAAATACTTAAAATAAGCTATGATGGTTTGGAAGAAAATGAAAAGGGAATTTTCTTAGACATAGCTTGTTTCTTCAATACCTGTGAACTGGGTAATGTCACTCCTTTGCTAAAAGCTCATGGTTTTCATGTAGAAGATGGTTTGAGAGTGTTGGTTGACAGATCTCTCATAAAGATTGATTCTTCTGATTTTTTGAGAATGCATGACTTAATTCGAGACACAGGCAGAGAAATTGTAAGGAAGGAATCAACAATTGAGCTAGACGTAGTAGATTATGGTTTAACGAGGACATTGTTCATGTTCTGGAGGAAAATACGGGATCTGATAAAATAG 1614 0.3798 MARRISLSLSSSHHTWIYDVFLNFRGEDTRFYFTDNLYHSLCQKGIHTFIDQEGLRKGEEITPALFHAIQNSRISIVVFSKNYASSTFCLNELVKILECAKEEGRSIYPIFYVVDPSEIRYQTGTYAEVLSKHEAKFHNDADNEKAKKWRKALQEAANLSGWHFQHGSGSEYEFIEKIVVEIFTKINYIPLYVPNNGIGLENAVQGVKSLLGDGSAVNMIGIYGIGGIGKTTIARALYNTIFWHYEGSCFLPDIRENAINKYGIVQLQEILLSEILKEEDIKVRDINRGIPLIKRRLERKKVLLVLDDVDKIEQLKVLAGECDWFGSGSIIIITTRDKHLLEAHGVVNLYEVKPLHVEKALELFNRHAFKNGKVDPAHMNISKRAVSYACGLPLALEVIGSHLFGKSLDECRSALDKYESIPHEKIHEILKISYDGLEENEKGIFLDIACFFNTCELGNVTPLLKAHGFHVEDGLRVLVDRSLIKIDSSDFLRMHDLIRDTGREIVRKESTIELDVVDYGLTRTLFMFWRKIRDLIK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00861 537 Gene3D - 355 438 IPR042197 -
Vian8g00861 537 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 188 - -
Vian8g00861 537 Gene3D - 11 187 IPR035897 -
Vian8g00861 537 PRINTS Disease resistance protein signature 219 234 - -
Vian8g00861 537 PRINTS Disease resistance protein signature 296 310 - -
Vian8g00861 537 PRINTS Disease resistance protein signature 389 403 - -
Vian8g00861 537 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 510 IPR044974 GO:0006952
Vian8g00861 537 Pfam NB-ARC domain 207 432 IPR002182 GO:0043531
Vian8g00861 537 Pfam TIR domain 18 187 IPR000157 GO:0007165
Vian8g00861 537 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Vian8g00861 537 SUPERFAMILY "Winged helix" DNA-binding domain 425 511 IPR036390 -
Vian8g00861 537 ProSiteProfiles TIR domain profile. 16 186 IPR000157 GO:0007165
Vian8g00861 537 SMART till_3 17 159 IPR000157 GO:0007165
Vian8g00861 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 448 IPR027417 -
Vian8g00861 537 Gene3D - 188 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00861 Vian-Chr8 19931557 19933915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00861 18 510 WRKY Transcription Factor Family AT4G12020 32.072 1.95e-58 208