Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00854 ATGTCCTTGCTAACGGTGGCGTACCAAAGGGGCTCAGGTGAGTTTATCCGGTTCACCGCGGATGACGGTGGTGAGGGTGAACATGGTTATGGACATGATGGTGGTAGTGGTGGTTCAGCAGGCTTCAATTTTAACCAAGGGATGCTGCAACAACAAGGTGAGGTAACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGGCAAATGGTTTCAGCTTTGACACATGTTGTTTCGTCAGGGTCTGACCAGAGGAGCACCGAATGGATGCAACAAAGTGGTTATCCTATGATGTCAGGTTTCGCACATGCACCTTCTCTTTCTCGTTTGTCTTCTTTCTCTTCCTCTCCTTCTCCTTCTTCTGGACCCTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTAATACCTCTTCTTCACATAACCTGATGCAACAACAAACTGCTCCCAGACTCTTCAGAACAACACTTGCTGACTTCATGCTACCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAGCTCCCACCTCCACAACTACAACAGTAACAGCAGCAGCAACTGCTGTTACTGCTGTTACTGAAACTACGACTGGAGATGGGGAAAGGAGGAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCCGCAAGAGTTTGGCTTGGCACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGGGCAGTTCCCCCTATTCAACCTTTCCAACCCGCCACAAGACTAACCGTTTCTGACTCCTCCACCACTCAATTCCGACCACTCACCACGGCCATGGCGGCGCCACCCTTCATTCAGCCGCCAAATATGCAAAGCTCCTCTGACTTGATCAGAGACTATTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAGCATCATCAGCATCAGCATCAGCTTCAACAACAACAACAACCACAACCACAACCTTCTAGTTTGCTTCAGCAGTTCTACTACAATGCACAATTGGCTTCTCTTCAATCACCTTCATTCTCTTCTTCTGTGTCACAAACTCCATTCCCGTTATTCTCAACATCTCCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAAGTCAACAAATGAGTTATTTCCAACCACTGGAAAGCCTCCCTCCAGCCGGCAGCAGGCCGGAGATGCCGCCGTCAACATGGTCCGATACTGGTGGCAACCCGCCACCTTCCGGTTCTGCAAAATCCCCAATTCCTAAGGTTTCATCTCCAACATCATCCGCACCTGTGAAATCACCGGTTCCCAAGGTCTCATCTCCAACATCATCTACACCTGTGAAATCACCGGTTCCTAAGGCTTCATCTCCAACATCATCTCCTGGGAAATCTCCAGTCCCCAAGGCTATATCCCCAGCATCATCTGCTCCTGTGAAATTACCAGTTCCAAAACCTACATCTCCATTATCTGCTCCTGTGATTTTTGAGCCATTTGGTCTTGTTGAGGTTGTCCAACTGCCTCTTGACTTGGAAACAGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGTCAAGATACCACCGCAAAATCGGCAGACTTAGATGATGATGAAGGTGGATTGACTTTAAATGCTCACTCCAGAGCATTGCTGATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGTAG 1926 0.4782 MSLLTVAYQRGSGEFIRFTADDGGEGEHGYGHDGGSGGSAGFNFNQGMLQQQGEVTMQGGSLVSGYNRGDPELRQMVSALTHVVSSGSDQRSTEWMQQSGYPMMSGFAHAPSLSRLSSFSSSPSPSSGPSGVGQKRGREEQETNTSSSHNLMQQQTAPRLFRTTLADFMLPSQGDSSSVTEEAPTSTTTTVTAAATAVTAVTETTTGDGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPIQPFQPATRLTVSDSSTTQFRPLTTAMAAPPFIQPPNMQSSSDLIRDYLQYSQLLQSDFQQQHHQHQHQLQQQQQPQPQPSSLLQQFYYNAQLASLQSPSFSSSVSQTPFPLFSTSPQFSSASFPMFSSQQMSYFQPLESLPPAGSRPEMPPSTWSDTGGNPPPSGSAKSPIPKVSSPTSSAPVKSPVPKVSSPTSSTPVKSPVPKASSPTSSPGKSPVPKAISPASSAPVKLPVPKPTSPLSAPVIFEPFGLVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVVNGSVPAQ 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00854 641 ProSiteProfiles AP2/ERF domain profile. 214 271 IPR001471 GO:0003700|GO:0006355
Vian8g00854 641 SUPERFAMILY DNA-binding domain 214 272 IPR016177 GO:0003677
Vian8g00854 641 Gene3D AP2/ERF domain 213 273 IPR036955 GO:0003700|GO:0006355
Vian8g00854 641 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 526 630 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vian8g00854 641 FunFam Ethylene-responsive transcription factor 2 213 272 - -
Vian8g00854 641 MobiDBLite consensus disorder prediction 113 131 - -
Vian8g00854 641 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 600 632 IPR029123 -
Vian8g00854 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 526 585 IPR000504 GO:0003723
Vian8g00854 641 MobiDBLite consensus disorder prediction 430 497 - -
Vian8g00854 641 CDD AP2 214 273 IPR001471 GO:0003700|GO:0006355
Vian8g00854 641 PRINTS Proline rich extensin signature 419 431 - -
Vian8g00854 641 PRINTS Proline rich extensin signature 445 466 - -
Vian8g00854 641 PRINTS Proline rich extensin signature 466 482 - -
Vian8g00854 641 PRINTS Proline rich extensin signature 504 529 - -
Vian8g00854 641 PRINTS Proline rich extensin signature 485 502 - -
Vian8g00854 641 PRINTS Proline rich extensin signature 376 388 - -
Vian8g00854 641 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 526 579 IPR000504 GO:0003723
Vian8g00854 641 SMART rrm1_1 514 581 IPR000504 GO:0003723
Vian8g00854 641 MobiDBLite consensus disorder prediction 416 518 - -
Vian8g00854 641 PRINTS Ethylene responsive element binding protein signature 237 253 IPR001471 GO:0003700|GO:0006355
Vian8g00854 641 PRINTS Ethylene responsive element binding protein signature 215 226 IPR001471 GO:0003700|GO:0006355
Vian8g00854 641 Pfam AP2 domain 214 263 IPR001471 GO:0003700|GO:0006355
Vian8g00854 641 SUPERFAMILY RNA-binding domain, RBD 526 585 IPR035979 GO:0003676
Vian8g00854 641 MobiDBLite consensus disorder prediction 113 155 - -
Vian8g00854 641 Gene3D - 525 599 IPR012677 -
Vian8g00854 641 SMART rav1_2 214 277 IPR001471 GO:0003700|GO:0006355
Vian8g00854 641 MobiDBLite consensus disorder prediction 338 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00854 Vian-Chr8 19701180 19717552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00854 211 287 AP2-EREBP Transcription Factor Family AT2G33710 74.359 1.35e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian8g00854 RRM_1 1.3e-10 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00854 - - vun:114180418 592.423