Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00847 ATGGCCGCTTCCACCATGGCTCTCTCTTCGCCATCATTGGCTGGTCAAGCCATAAAGCTGTCTCCTTCCACCCCGGACCTCTCCGGTGGAAGGATTTCGATGAGGAAGACGGCCTCCAAGTCGGTTTCCTCTGGAAGTCCATGGTACGGCCCAGACCGTGTGAAGTACCTGGGCCCATTCTCGGGTGAGGCTCCTTCTTACCTGACGGGAGAATTCCCAGGTGACTATGGGTGGGACACTGCCGGGCTTTCGGCTGACCCGGAGACATTTGCTCGGAACCGTGAACTGGAAGTGATCCACTCTCGATGGGCGATGTTGGGGGCTTTGGGGTGTGTGTTCCCTGAACTGTTGGCCCGGAACGGTGTGAAGTTCGGGGAGGCGGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGTGAGGGTGGCCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCACACAGGTGATATTGATGGGTGCAGTGGAGGGTTACCGCATTGCCGGTGGGCCTTTGGGTGAGGTGACTGACCCAATCTACCCGGGTGGGAGCTTCGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGTTGAAGGCGGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGTGAGGGTGGCCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCACACAGGTGATATTGATGGGTGCAGTGGAGGGTTACCGCATTGCCGGTGGGCCTTTGGGTGAGGTGACTGACCCAATCTACCCGGGTGGGAGCTTCGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAAGCCATTGTCACTGGCAAGGGACCTTTGGAGAACCTCGCCGATCACCTTGCCGACCCCGTCAACAACAACGCCTGGGCCTACGCCACCAACTTTGTCCCTGGAAAGTGA 1044 0.568 MAASTMALSSPSLAGQAIKLSPSTPDLSGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00847 347 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 209 IPR001344 GO:0009765|GO:0016020
Vian8g00847 347 MobiDBLite consensus disorder prediction 19 45 - -
Vian8g00847 347 FunFam Chlorophyll a-b binding protein 3A, chloroplastic 230 340 - -
Vian8g00847 347 FunFam Chlorophyll a-b binding protein, chloroplastic 55 147 - -
Vian8g00847 347 Pfam Chlorophyll A-B binding protein 64 210 IPR022796 -
Vian8g00847 347 Pfam Chlorophyll A-B binding protein 212 313 IPR022796 -
Vian8g00847 347 Gene3D Chlorophyll a/b binding protein domain 55 209 - -
Vian8g00847 347 Gene3D Chlorophyll a/b binding protein domain 210 340 - -
Vian8g00847 347 SUPERFAMILY Chlorophyll a-b binding protein 210 344 - -
Vian8g00847 347 SUPERFAMILY Chlorophyll a-b binding protein 47 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00847 Vian-Chr8 19400717 19431618 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00847 191 347 Chloroplast and Mitochondria Gene Families AT1G29930 84.810 3.32e-87 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00847 K08912 - cave:132168857 640.958